Variant report

Variant	rs73387434
Chromosome Location	chr6:26021044-26021045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:343)
CpG islands
(count:61)
Chromatin interactive
region (count:56)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:343 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB33	chr6:26020489-26021114	K562	blood:	n/a	n/a
2	TCF7L2	chr6:26020561-26021469	PANC-1	pancreas:	n/a	n/a
3	CTCF	chr6:26021000-26021150	NHEK	skin:	n/a	n/a
4	CTCF	chr6:26020661-26021162	IMR90	lung:	n/a	n/a
5	POU2F2	chr6:26020551-26021594	GM12891	blood:	n/a	n/a
6	TAF1	chr6:26020447-26021131	H1-neurons	neurons:	n/a	n/a
7	YY1	chr6:26020573-26021168	K562	blood:	n/a	n/a
8	POLR2A	chr6:26020527-26022597	GM12891	blood:	n/a	n/a
9	POLR2A	chr6:26020372-26022413	MCF-7	breast:	n/a	n/a
10	SIN3A	chr6:26020559-26021478	H1-hESC	embryonic stem cell:	n/a	n/a
11	MAX	chr6:26020525-26021527	A549	lung:	n/a	n/a
12	REST	chr6:26020513-26021149	SK-N-SH	brain:	n/a	n/a
13	POLR2A	chr6:26020514-26022622	GM19193	blood:	n/a	n/a
14	POLR2A	chr6:26020505-26022713	GM18505	blood:	n/a	n/a
15	ATF2	chr6:26020387-26022657	H1-hESC	embryonic stem cell:	n/a	n/a
16	TAF1	chr6:26020539-26022319	H1-hESC	embryonic stem cell:	n/a	n/a
17	STAT3	chr6:26020004-26021961	MCF10A-Er-Src	breast:	n/a	chr6:26020153-26020173 chr6:26020159-26020167 chr6:26021706-26021718
18	TCF3	chr6:26020578-26021579	GM12878	blood:	n/a	n/a
19	TCF12	chr6:26020392-26022752	A549	lung:	n/a	n/a
20	GATA3	chr6:26020325-26022724	A549	lung:	n/a	chr6:26022570-26022578
21	ZNF143	chr6:26020544-26021161	GM12878	blood:	n/a	n/a
22	YY1	chr6:26020505-26021626	GM12892	blood:	n/a	n/a
23	POLR2A	chr6:26020494-26022751	U87	brain:	n/a	n/a
24	YY1	chr6:26020841-26021130	K562	blood:	n/a	n/a
25	POLR2A	chr6:26020507-26022579	HEK293	kidney:	n/a	n/a
26	POLR2A	chr6:26020353-26022750	PFSK-1	brain:	n/a	n/a
27	POU2F2	chr6:26020410-26022417	GM12878	blood:	n/a	n/a
28	PBX3	chr6:26020473-26021067	A549	lung:	n/a	n/a
29	MYC	chr6:26020793-26021166	MCF-7	breast:	n/a	n/a
30	RCOR1	chr6:26020513-26022667	Hela-S3	cervix:	n/a	n/a
31	TCF7L2	chr6:26020585-26022325	Hela-S3	cervix:	n/a	n/a
32	POLR2A	chr6:26020495-26022765	HCT-116	colon:	n/a	n/a
33	YY1	chr6:26020484-26021609	GM12878	blood:	n/a	n/a
34	STAT1	chr6:26020546-26021254	GM12878	blood:	n/a	n/a
35	POLR2A	chr6:26020302-26022826	SK-N-MC	brain:	n/a	n/a
36	RELA	chr6:26020510-26022601	GM12891	blood:	n/a	n/a
37	REST	chr6:26020512-26021217	A549	lung:	n/a	n/a
38	MEF2A	chr6:26020494-26021198	GM12878	blood:	n/a	chr6:26020648-26020659 chr6:26020649-26020658 chr6:26020642-26020663 chr6:26020646-26020661 chr6:26020642-26020663
39	EP300	chr6:26020512-26021106	GM12878	blood:	n/a	n/a
40	SIN3AK20	chr6:26020547-26021311	A549	lung:	n/a	n/a
41	CTCF	chr6:26020900-26021050	AG04449	skin:	n/a	n/a
42	MAZ	chr6:26020582-26021076	GM12878	blood:	n/a	n/a
43	POLR2A	chr6:26020647-26022596	ECC-1	luminal epithelium:	n/a	n/a
44	MAX	chr6:26020817-26022357	MCF-7	breast:	n/a	n/a
45	CTCF	chr6:26020900-26021050	GM12864	blood:	n/a	n/a
46	MYC	chr6:26020515-26021978	MCF10A-Er-Src	breast:	n/a	n/a
47	CHD1	chr6:26020088-26022955	IMR90	lung:	n/a	chr6:26021724-26021734
48	ELF1	chr6:26020415-26021218	GM12878	blood:	n/a	n/a
49	MAZ	chr6:26020377-26022720	IMR90	lung:	n/a	n/a
50	ELK4	chr6:26020675-26021239	HEK293	kidney:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:26021008-26021058	Hepatocyte	liver:	n/a
2	chr6:26021008-26021058	NB4	blood:	n/a
3	chr6:26021008-26021058	U87	brain:	n/a
4	chr6:26021008-26021058	SK-N-SH_RA	brain:	n/a
5	chr6:26021008-26021058	HNPCEpiC	eye:	n/a
6	chr6:26021008-26021058	SAEC	small airway:	n/a
7	chr6:26021008-26021058	AG09309	skin:	n/a
8	chr6:26021008-26021058	HEK293	kidney:	embryo
9	chr6:26021008-26021058	SK-N-SH	brain:	n/a
10	chr6:26021008-26021058	AG04449	skin:	fetal
11	chr6:26021008-26021058	ProgFib	skin:	n/a
12	chr6:26021008-26021058	GM06990	blood:	n/a
13	chr6:26021008-26021058	AG04450	lung:	fetal
14	chr6:26021008-26021058	NHDF-neo	bronchial:	n/a
15	chr6:26021008-26021058	LNCaP	prostate:	n/a
16	chr6:26021008-26021058	SKMC	muscle:	n/a
17	chr6:26021008-26021058	HUVEC	blood vessel:	n/a
18	chr6:26021008-26021058	ovcar-3	ovarian:	n/a
19	chr6:26021008-26021058	BJ	skin:	n/a
20	chr6:26021008-26021058	HCF	heart:	n/a
21	chr6:26021008-26021058	AoSMC	blood vessel:	n/a
22	chr6:26021008-26021058	IMR90	lung:	fetal
23	chr6:26021008-26021058	HCM	heart:	n/a
24	chr6:26021008-26021058	K562	blood:	n/a
25	chr6:26021008-26021058	HPAEpiC	pulmonary alveolar:	n/a
26	chr6:26021008-26021058	NH-A	brain:	n/a
27	chr6:26021008-26021058	MCF10A-Er-Src	breast:	n/a
28	chr6:26021008-26021058	GM12891	blood:	n/a
29	chr6:26021008-26021058	Hela-S3	cervix:	n/a
30	chr6:26021008-26021058	Jurkat	blood:	n/a
31	chr6:26021008-26021058	GM19239	blood:	n/a
32	chr6:26021008-26021058	A549	lung:	n/a
33	chr6:26021008-26021058	GM12892	blood:	n/a
34	chr6:26021008-26021058	HepG2	liver:	n/a
35	chr6:26021008-26021058	HL-60	blood:	n/a
36	chr6:26021008-26021058	HMEC	breast:	n/a
37	chr6:26021008-26021058	HCPEpiC	choroid plexus:	n/a
38	chr6:26021008-26021058	PrEC	prostate:	n/a
39	chr6:26021008-26021058	MCF-7	breast:	n/a
40	chr6:26021008-26021058	HRE	kidney:	n/a
41	chr6:26021008-26021058	HIPEpiC	eye:	n/a
42	chr6:26021008-26021058	AG10803	skin:	n/a
43	chr6:26021008-26021058	HCT-116	colon:	n/a
44	chr6:26021008-26021058	PANC-1	pancreas:	n/a
45	chr6:26021008-26021058	Caco-2	colon:	n/a
46	chr6:26021008-26021058	GM12878	blood:	n/a
47	chr6:26021008-26021058	AG09319	gingival:	n/a
48	chr6:26021008-26021058	PFSK-1	brain:	n/a
49	chr6:26021008-26021058	NT2-D1	testis:	n/a
50	chr6:26021008-26021058	RPTEC	kidney:	n/a

(count:56 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr3:150480540..150481237-chr6:26020610..26021240,2	Hela-S3	cervix:
2	chr6:26020264..26023736-chr6:26216792..26220704,4	MCF-7	breast:
3	chr5:40834775..40835629-chr6:26020788..26021772,2	Hela-S3	cervix:
4	chr11:65667671..65668334-chr6:26020656..26021303,2	Hela-S3	cervix:
5	chr1:156698127..156699060-chr6:26020637..26021559,2	Hela-S3	cervix:
6	chr15:51057335..51059727-chr6:26020365..26022635,2	MCF-7	breast:
7	chr6:26019943..26022943-chr6:27098200..27102148,7	MCF-7	breast:
8	chr1:145610494..145611358-chr6:26020448..26021274,2	Hela-S3	cervix:
9	chr6:26020614..26023729-chr6:26272152..26276212,4	MCF-7	breast:
10	chr1:151254480..151256114-chr6:26019497..26022258,2	MCF-7	breast:
11	chr6:26020721..26023023-chr6:27777113..27779197,2	MCF-7	breast:
12	chr15:69452701..69453415-chr6:26020573..26021393,2	Hela-S3	cervix:
13	chr4:103748229..103748909-chr6:26020684..26021200,2	Hela-S3	cervix:
14	chr6:26017750..26036418-chr6:26116875..26130553,65	MCF-7	breast:
15	chr6:26020967..26021726-chr6:26045519..26046335,2	Hela-S3	cervix:
16	chr6:26020084..26022289-chr6:32156982..32159978,2	MCF-7	breast:
17	chr20:30194738..30195241-chr6:26020558..26021102,2	Hela-S3	cervix:
18	chr6:26020896..26022698-chr6:27805218..27807913,2	MCF-7	breast:
19	chr14:93580806..93583213-chr6:26020153..26021693,2	MCF-7	breast:
20	chr2:26467584..26468257-chr6:26020506..26021058,2	Hela-S3	cervix:
21	chr6:26018945..26024445-chr6:27858774..27864727,7	MCF-7	breast:
22	chr6:26020316..26021315-chr6:26031886..26032731,2	Hela-S3	cervix:
23	chr6:26020252..26023371-chr6:27112256..27114607,3	MCF-7	breast:
24	chr6:25999088..26001646-chr6:26019532..26021139,2	MCF-7	breast:
25	chr16:68768954..68771315-chr6:26019686..26022088,2	MCF-7	breast:
26	chr6:26020260..26024010-chr6:27780504..27784636,5	MCF-7	breast:
27	chr6:25992274..25993189-chr6:26020579..26021165,3	Hela-S3	cervix:
28	chr16:67207864..67208415-chr6:26020204..26021119,2	Hela-S3	cervix:
29	chr6:26019620..26034082-chr6:26100355..26110400,33	MCF-7	breast:
30	chr1:154946388..154947381-chr6:26020702..26021673,2	Hela-S3	cervix:
31	chr14:105144072..105144687-chr6:26020794..26021677,2	Hela-S3	cervix:
32	chr1:28832300..28833074-chr6:26020398..26021163,2	Hela-S3	cervix:
33	chr16:46723293..46723894-chr6:26020511..26021178,2	Hela-S3	cervix:
34	chr1:180991642..180992156-chr6:26020348..26021120,2	Hela-S3	cervix:
35	chr14:75745222..75746036-chr6:26020632..26021239,3	Hela-S3	cervix:
36	chr6:26020714..26025029-chr6:27113708..27118688,4	K562	blood:
37	chr6:26020317..26021145-chr9:123605108..123605640,2	Hela-S3	cervix:
38	chr6:17706222..17707873-chr6:26020674..26023550,2	MCF-7	breast:
39	chr6:26019525..26036768-chr6:26154463..26163826,38	MCF-7	breast:
40	chr11:118977716..118978572-chr6:26020266..26021245,2	Hela-S3	cervix:
41	chr16:1020186..1020936-chr6:26020511..26021145,2	Hela-S3	cervix:
42	chr6:26020607..26021117-chr6:109703032..109703827,2	Hela-S3	cervix:
43	chr6:26019660..26022685-chr6:27833901..27836758,3	MCF-7	breast:
44	chr6:26020982..26024830-chr6:26195555..26199073,5	MCF-7	breast:
45	chr12:53773232..53774107-chr6:26020191..26021115,2	Hela-S3	cervix:
46	chr6:26020331..26021154-chrX:16804305..16804892,2	Hela-S3	cervix:
47	chr12:49760226..49761054-chr6:26020583..26021188,2	Hela-S3	cervix:
48	chr6:26020054..26021608-chr6:30585009..30586563,2	K562	blood:
49	chr6:25990980..25994781-chr6:26019644..26023390,9	MCF-7	breast:
50	chr20:60639900..60641504-chr6:26020456..26022110,2	MCF-7	breast:

No data

Variant related genes	Relation type
HIST1H4A	TF binding region
HIST1H1A	TF binding region
HIST1H1A	CpG island
HIST1H4A	CpG island
ENSG00000039068	Chromatin interaction
ENSG00000226752	Chromatin interaction
ENSG00000124575	Chromatin interaction
ENSG00000135823	Chromatin interaction
ENSG00000265291	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000185591	Chromatin interaction
ENSG00000196374	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000143373	Chromatin interaction
ENSG00000216331	Chromatin interaction
ENSG00000272558	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000172375	Chromatin interaction
ENSG00000138029	Chromatin interaction
ENSG00000084754	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000124789	Chromatin interaction
ENSG00000181788	Chromatin interaction
ENSG00000204304	Chromatin interaction
ENSG00000160691	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000100605	Chromatin interaction
ENSG00000103227	Chromatin interaction
ENSG00000272269	Chromatin interaction
ENSG00000091651	Chromatin interaction
ENSG00000123352	Chromatin interaction
ENSG00000182611	Chromatin interaction
ENSG00000272065	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000109332	Chromatin interaction
ENSG00000264395	Chromatin interaction
ENSG00000140939	Chromatin interaction
ENSG00000204568	Chromatin interaction
ENSG00000170345	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000180198	Chromatin interaction
ENSG00000168242	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000204569	Chromatin interaction
ENSG00000086712	Chromatin interaction
ENSG00000198518	Chromatin interaction
ENSG00000095261	Chromatin interaction
ENSG00000173207	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000059145	Chromatin interaction
ENSG00000138600	Chromatin interaction
ENSG00000187475	Chromatin interaction
ENSG00000143319	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000184357	Chromatin interaction
ENSG00000186141	Chromatin interaction
ENSG00000112308	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000069329	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000143303	Chromatin interaction
ENSG00000196532	Chromatin interaction
ENSG00000138604	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000145592	Chromatin interaction
ENSG00000266374	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000175592	Chromatin interaction
ENSG00000121848	Chromatin interaction
ENSG00000272462	Chromatin interaction
ENSG00000130699	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000242125	Chromatin interaction
ENSG00000218690	Chromatin interaction
ENSG00000197153	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11965752	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11968841	1.00[AMR][1000 genomes]
rs56860308	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59376350	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59914380	1.00[AMR][1000 genomes]
rs68078188	1.00[AMR][1000 genomes]
rs6901777	1.00[AMR][1000 genomes]
rs73383251	1.00[AMR][1000 genomes]
rs73383277	1.00[AMR][1000 genomes]
rs73383280	1.00[AMR][1000 genomes]
rs73383290	1.00[AMR][1000 genomes]
rs73385041	1.00[AMR][1000 genomes]
rs73385079	0.82[AFR][1000 genomes]
rs73387409	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73387422	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389453	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393407	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393431	1.00[AMR][1000 genomes]
rs73393433	1.00[AMR][1000 genomes]
rs73393455	1.00[AMR][1000 genomes]
rs7741632	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv432857	chr6:25957109-26072445	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	451 gene(s)	inside rSNPs	diseases
8	nsv1015627	chr6:25973495-26100483	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
9	nsv538164	chr6:25973495-26100483	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
10	nsv1028456	chr6:25984457-26174993	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
11	nsv538165	chr6:25984457-26174993	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
12	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
13	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
14	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
15	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
16	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26019000-26023400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:26019400-26022800	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr6:26019600-26022800	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr6:26019800-26021800	Active TSS	Stomach Smooth Muscle	stomach
5	chr6:26019800-26022000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:26019800-26022000	Active TSS	Duodenum Mucosa	Duodenum
7	chr6:26019800-26022200	Active TSS	Liver	Liver
8	chr6:26019800-26022600	Active TSS	H9 Cell Line	embryonic stem cell
9	chr6:26019800-26022600	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr6:26019800-26022800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr6:26019800-26023000	Active TSS	Brain Germinal Matrix	brain
12	chr6:26019800-26023400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:26020000-26022000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:26020000-26022000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:26020000-26022400	Active TSS	Placenta Amnion	Placenta Amnion
16	chr6:26020000-26022800	Active TSS	H1 Cell Line	embryonic stem cell
17	chr6:26020000-26022800	Active TSS	Fetal Kidney	kidney
18	chr6:26020200-26021400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:26020200-26021600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:26020200-26021600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
21	chr6:26020200-26022200	Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr6:26020200-26022200	Active TSS	Fetal Lung	lung
23	chr6:26020200-26022200	Active TSS	NHDF-Ad	bronchial
24	chr6:26020200-26022400	Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr6:26020200-26022400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:26020200-26022600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:26020200-26022600	Flanking Active TSS	Primary hematopoietic stem cells	blood
28	chr6:26020200-26022600	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr6:26020200-26022600	Active TSS	Fetal Intestine Small	intestine
30	chr6:26020200-26022600	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr6:26020200-26022600	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr6:26020200-26022600	Active TSS	Right Ventricle	heart
33	chr6:26020200-26022600	Active TSS	NHLF	lung
34	chr6:26020200-26022800	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr6:26020200-26022800	Active TSS	Fetal Brain Female	brain
36	chr6:26020200-26022800	Active TSS	Fetal Stomach	stomach
37	chr6:26020200-26022800	Active TSS	A549	lung
38	chr6:26020200-26023400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:26020400-26021400	Flanking Active TSS	Placenta	Placenta
40	chr6:26020400-26021400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
41	chr6:26020400-26022000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:26020400-26022000	Active TSS	Colon Smooth Muscle	Colon
43	chr6:26020400-26022000	Active TSS	Hela-S3	cervix
44	chr6:26020400-26022200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:26020400-26022200	Active TSS	Primary T cells from cord blood	blood
46	chr6:26020400-26022200	Active TSS	Fetal Intestine Large	intestine
47	chr6:26020400-26022400	ZNF genes & repeats	Fetal Brain Male	brain
48	chr6:26020400-26022400	Active TSS	Psoas Muscle	Psoas
49	chr6:26020400-26022600	Active TSS	Brain Cingulate Gyrus	brain
50	chr6:26020400-26022600	Active TSS	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links