Variant report

Variant	rs7338758
Chromosome Location	chr13:30137828-30137829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30137163..30140178-chr13:30141147..30143927,3	K562	blood:
2	chr13:30137385..30139177-chr13:30144253..30145908,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11616506	0.85[CHB][hapmap];0.81[CHD][hapmap]
rs166828	0.85[CHB][hapmap]
rs1877463	0.85[CHB][hapmap]
rs2137395	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs280922	0.85[CHB][hapmap]
rs280923	0.85[CHB][hapmap]
rs280924	0.84[CHB][hapmap]
rs280930	0.85[CHB][hapmap]
rs280933	0.85[CHB][hapmap]
rs280934	0.85[CHB][hapmap]
rs280936	0.85[CHB][hapmap]
rs3803266	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs476506	0.85[CHB][hapmap];0.89[CHD][hapmap];0.81[ASN][1000 genomes]
rs579451	0.85[CHB][hapmap];0.92[CHD][hapmap];0.81[ASN][1000 genomes]
rs617892	0.85[CHB][hapmap]
rs7997827	0.85[CHB][hapmap]
rs9506206	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9508499	1.00[ASW][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];0.92[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9551700	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv979	chr13:30122254-30167821	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30097200-30138400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr13:30113200-30141600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:30123000-30138600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr13:30125000-30147400	Weak transcription	A549	lung
5	chr13:30125800-30142200	Weak transcription	K562	blood
6	chr13:30125800-30143200	Weak transcription	Gastric	stomach
7	chr13:30126000-30138400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:30126000-30161400	Weak transcription	Primary B cells from cord blood	blood
9	chr13:30126200-30147200	Weak transcription	Spleen	Spleen
10	chr13:30127400-30142200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr13:30127600-30144000	Weak transcription	Fetal Intestine Small	intestine
12	chr13:30127600-30146200	Weak transcription	Right Ventricle	heart
13	chr13:30127600-30151400	Weak transcription	Aorta	Aorta
14	chr13:30127600-30156400	Weak transcription	Lung	lung
15	chr13:30127800-30143200	Weak transcription	Fetal Thymus	thymus
16	chr13:30127800-30147400	Weak transcription	Fetal Intestine Large	intestine
17	chr13:30127800-30147600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr13:30128000-30139400	Weak transcription	Left Ventricle	heart
19	chr13:30128000-30143600	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr13:30128000-30146800	Weak transcription	HSMMtube	muscle
21	chr13:30128000-30163600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr13:30128200-30138200	Weak transcription	Fetal Muscle Leg	muscle
23	chr13:30128200-30143600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr13:30128200-30146000	Weak transcription	Hela-S3	cervix
25	chr13:30128200-30147400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr13:30128200-30147400	Weak transcription	Thymus	Thymus
27	chr13:30128400-30138400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr13:30128400-30143400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr13:30128600-30138000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr13:30128600-30143400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr13:30128600-30146600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr13:30128600-30147400	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr13:30128600-30161800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr13:30128800-30138000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr13:30128800-30139400	Weak transcription	Esophagus	oesophagus
36	chr13:30128800-30143400	Weak transcription	Dnd41	blood
37	chr13:30128800-30155800	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr13:30128800-30168200	Weak transcription	Primary T cells from cord blood	blood
39	chr13:30129000-30138000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr13:30129000-30143200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr13:30131400-30147800	Weak transcription	Fetal Brain Female	brain
42	chr13:30131800-30147600	Weak transcription	GM12878-XiMat	blood
43	chr13:30135400-30138800	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr13:30135400-30139400	Enhancers	NHDF-Ad	bronchial
45	chr13:30135400-30140000	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr13:30135400-30140200	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr13:30135800-30138000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr13:30135800-30138000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr13:30135800-30138800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr13:30135800-30140200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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