Variant report

Variant	rs73387770
Chromosome Location	chr18:8108379-8108380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16952888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952891	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16952897	0.85[AFR][1000 genomes]
rs2017321	0.83[AMR][1000 genomes]
rs2080108	0.83[AMR][1000 genomes]
rs7239189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73387778	0.95[AFR][1000 genomes]
rs73387785	0.85[AFR][1000 genomes]
rs73387789	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8067400-8110200	Weak transcription	Right Ventricle	heart
2	chr18:8068600-8124800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr18:8088800-8113400	Weak transcription	A549	lung
4	chr18:8092800-8122200	Weak transcription	Thymus	Thymus
5	chr18:8096600-8125000	Weak transcription	Pancreas	Pancrea
6	chr18:8102800-8126600	Weak transcription	Psoas Muscle	Psoas
7	chr18:8103000-8110400	Weak transcription	Left Ventricle	heart
8	chr18:8103400-8108600	Weak transcription	Fetal Kidney	kidney
9	chr18:8103400-8116400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr18:8103400-8116600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr18:8103400-8123800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr18:8103600-8110000	Weak transcription	Adipose Nuclei	Adipose
13	chr18:8103600-8110000	Weak transcription	Fetal Heart	heart
14	chr18:8103600-8116000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr18:8103600-8116400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr18:8103600-8117800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr18:8103600-8122200	Weak transcription	Aorta	Aorta
18	chr18:8103600-8124800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr18:8103600-8136600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr18:8103600-8139200	Weak transcription	Brain Anterior Caudate	brain
21	chr18:8103800-8116200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr18:8104200-8132600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr18:8107600-8115200	Weak transcription	NHEK	skin
24	chr18:8107800-8115200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr18:8108000-8115200	Weak transcription	HMEC	breast
26	chr18:8108000-8116200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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