Variant report

Variant	rs73387889
Chromosome Location	chr10:118976075-118976076
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:118975183..118978653-chr10:118979198..118982710,3	MCF-7	breast:
2	chr10:118975747..118977593-chr10:119078147..119080329,46	MCF-7	breast:
3	chr10:118975832..118976436-chr12:44626834..44627700,2	MCF-7	breast:
4	chr10:118975993..118976717-chr10:119202046..119202670,2	K562	blood:
5	chr10:118975861..118976763-chr10:119237489..119238069,2	MCF-7	breast:
6	chr10:118973979..118977978-chr10:119077721..119080771,4	MCF-7	breast:
7	chr10:118975767..118976754-chr10:118986014..118987065,3	K562	blood:
8	chr10:118975266..118977159-chr10:119077947..119080264,23	MCF-7	breast:
9	chr10:118975358..118977652-chr10:119078316..119080186,2	MCF-7	breast:
10	chr10:118975902..118976717-chr10:120323880..120324813,2	MCF-7	breast:
11	chr10:118975857..118976368-chr19:3985563..3986371,2	MCF-7	breast:
12	chr10:118975767..118977026-chr10:119079220..119080275,10	K562	blood:
13	chr10:118975810..118976793-chr10:118986044..118987013,2	MCF-7	breast:
14	chr10:118975868..118977282-chr10:119208595..119209916,7	K562	blood:
15	chr10:118975873..118976726-chr10:119221718..119222483,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000165650	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs17095818	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17095821	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17095824	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17095831	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17095832	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17095848	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17095891	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17095893	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2420311	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3026039	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs363306	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs363307	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs363313	0.91[ASN][1000 genomes]
rs363315	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs363351	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs363352	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs363354	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs363362	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3847481	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3847482	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3847483	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3847484	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3858331	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3858335	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56830166	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56866787	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57142493	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57262314	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58122384	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58555599	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59578980	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59833995	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60085909	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60088429	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60805690	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61332182	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61680075	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118975000-118976200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:118975400-118977200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr10:118975600-118976200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
4	chr10:118975600-118977600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr10:118975800-118976200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:118975800-118976200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:118975800-118976200	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:118975800-118976200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:118975800-118976200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:118975800-118976200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:118975800-118976200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:118975800-118976200	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:118975800-118976200	Bivalent Enhancer	Fetal Thymus	thymus
14	chr10:118975800-118976200	Enhancers	Pancreas	Pancrea
15	chr10:118975800-118976200	Flanking Bivalent TSS/Enh	HepG2	liver
16	chr10:118975800-118976400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
17	chr10:118975800-118976400	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:118975800-118976400	Enhancers	Primary B cells from cord blood	blood
19	chr10:118975800-118976400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
20	chr10:118975800-118976400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr10:118975800-118976400	Bivalent Enhancer	Placenta	Placenta
22	chr10:118975800-118976400	Enhancers	Lung	lung
23	chr10:118975800-118976400	Bivalent/Poised TSS	NH-A	brain
24	chr10:118975800-118976600	Bivalent/Poised TSS	HSMMtube	muscle
25	chr10:118975800-118977000	Bivalent/Poised TSS	Fetal Brain Female	brain
26	chr10:118975800-118977200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
27	chr10:118975800-118977200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
28	chr10:118975800-118977200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:118975800-118977200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:118975800-118977200	Enhancers	Spleen	Spleen
31	chr10:118976000-118976200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
32	chr10:118976000-118976200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:118976000-118976200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr10:118976000-118976200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
35	chr10:118976000-118976200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
36	chr10:118976000-118976200	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
37	chr10:118976000-118976200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
38	chr10:118976000-118976200	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr10:118976000-118976200	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
40	chr10:118976000-118976200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
41	chr10:118976000-118976200	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
42	chr10:118976000-118976200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr10:118976000-118976200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:118976000-118976200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:118976000-118976200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
46	chr10:118976000-118976200	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
47	chr10:118976000-118976200	Flanking Active TSS	Brain Anterior Caudate	brain
48	chr10:118976000-118976200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:118976000-118976200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
50	chr10:118976000-118976200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links