Variant report

Variant	rs73388195
Chromosome Location	chr18:9108172-9108173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9101529..9104224-chr18:9106427..9108818,4	MCF-7	breast:
2	chr18:9105722..9108472-chr18:9137021..9138742,2	MCF-7	breast:
3	chr18:9099316..9108402-chr18:9132066..9139576,22	K562	blood:

Variant related genes	Relation type
ENSG00000265257	Chromatin interaction
ENSG00000178127	Chromatin interaction
ENSG00000266053	Chromatin interaction
ENSG00000101745	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73388192	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73390109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73390120	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73390122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv431971	chr18:9081185-9326852	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1056258	chr18:9094498-9181498	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9103400-9111400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:9103400-9111600	Weak transcription	Pancreas	Pancrea
3	chr18:9103400-9113400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr18:9103400-9113400	Weak transcription	Spleen	Spleen
5	chr18:9103600-9108200	Transcr. at gene 5' and 3'	K562	blood
6	chr18:9103600-9110600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr18:9103800-9117000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr18:9104400-9116800	Weak transcription	Esophagus	oesophagus
9	chr18:9104400-9117000	Weak transcription	Lung	lung
10	chr18:9104400-9130000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr18:9104600-9111600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr18:9104600-9112200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr18:9104800-9108200	Enhancers	Fetal Intestine Large	intestine
14	chr18:9104800-9110400	Enhancers	Brain Substantia Nigra	brain
15	chr18:9105000-9112600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr18:9105400-9108600	Enhancers	Primary hematopoietic stem cells	blood
17	chr18:9105600-9108600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr18:9105800-9108400	Enhancers	Osteobl	bone
19	chr18:9106000-9108200	Enhancers	Fetal Heart	heart
20	chr18:9106000-9109200	Weak transcription	HSMM	muscle
21	chr18:9106200-9108200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr18:9106200-9108600	Enhancers	Rectal Smooth Muscle	rectum
23	chr18:9106200-9108600	Genic enhancers	A549	lung
24	chr18:9106200-9110000	Enhancers	Primary T cells fromperipheralblood	blood
25	chr18:9106200-9110600	Enhancers	Brain Anterior Caudate	brain
26	chr18:9106200-9111400	Enhancers	HepG2	liver
27	chr18:9106200-9111800	Enhancers	Duodenum Mucosa	Duodenum
28	chr18:9106200-9111800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr18:9106200-9116800	Weak transcription	Placenta	Placenta
30	chr18:9106200-9117000	Enhancers	Colon Smooth Muscle	Colon
31	chr18:9106200-9123200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr18:9106400-9108200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr18:9106400-9109000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr18:9106400-9109600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr18:9106400-9109800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr18:9107000-9108200	Enhancers	Fetal Brain Female	brain
37	chr18:9107000-9108800	Weak transcription	Gastric	stomach
38	chr18:9107000-9109800	Enhancers	NHLF	lung
39	chr18:9107000-9111400	Weak transcription	Right Atrium	heart
40	chr18:9107000-9113200	Weak transcription	HSMMtube	muscle
41	chr18:9107000-9113400	Weak transcription	Fetal Muscle Leg	muscle
42	chr18:9107000-9135200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr18:9107200-9109000	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr18:9107200-9109200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr18:9107200-9109400	Weak transcription	NH-A	brain
46	chr18:9107200-9111200	Enhancers	Muscle Satellite Cultured Cells	--
47	chr18:9107200-9111600	Enhancers	Liver	Liver
48	chr18:9107400-9108200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr18:9107400-9108200	Enhancers	Colonic Mucosa	Colon
50	chr18:9107400-9108800	Weak transcription	Brain Cingulate Gyrus	brain

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