Variant report

Variant	rs73388524
Chromosome Location	chr12:106678185-106678186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr12:106677880-106678835	H1-neurons	neurons:	n/a	n/a
2	FOXA1	chr12:106678116-106678836	HepG2	liver:	n/a	n/a
3	CEBPB	chr12:106678158-106678733	HepG2	liver:	n/a	n/a
4	MAFK	chr12:106678033-106678583	HepG2	liver:	n/a	n/a
5	POLR2A	chr12:106678109-106678703	H1-neurons	neurons:	n/a	n/a
6	FOXA2	chr12:106677916-106679001	HepG2	liver:	n/a	n/a
7	MYBL2	chr12:106678115-106678824	HepG2	liver:	n/a	n/a
8	FOXA1	chr12:106678183-106678812	HepG2	liver:	n/a	n/a
9	REST	chr12:106677944-106679025	H1-neurons	neurons:	n/a	n/a
10	MXI1	chr12:106678165-106678889	HepG2	liver:	n/a	n/a
11	ARID3A	chr12:106678171-106679157	HepG2	liver:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106640861..106643735-chr12:106674267..106678317,3	MCF-7	breast:
2	chr12:106634944..106646449-chr12:106667585..106679535,27	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs7298598	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7298823	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388513	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388516	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388519	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388522	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106666200-106680800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:106676200-106678200	Weak transcription	NHEK	skin
3	chr12:106676200-106679200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr12:106676600-106681000	Weak transcription	Stomach Mucosa	stomach
5	chr12:106677000-106681400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr12:106677200-106678600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:106677200-106682200	Weak transcription	Fetal Intestine Large	intestine
8	chr12:106677200-106683600	Enhancers	HepG2	liver
9	chr12:106677600-106679000	Enhancers	Fetal Heart	heart
10	chr12:106677600-106679800	Enhancers	Fetal Brain Male	brain
11	chr12:106678000-106678200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr12:106678000-106678600	Enhancers	Brain Cingulate Gyrus	brain
13	chr12:106678000-106678800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:106678000-106679000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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