Variant report

Variant	rs7338879
Chromosome Location	chr13:97783654-97783655
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7324333	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7325488	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053686	chr13:97771607-97802296	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97774000-97784400	Enhancers	Placenta	Placenta
2	chr13:97778600-97784000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:97778800-97783800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:97778800-97783800	Weak transcription	Brain Substantia Nigra	brain
5	chr13:97778800-97788200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:97779000-97786200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr13:97779000-97788400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr13:97779200-97785600	Weak transcription	Lung	lung
9	chr13:97781200-97785400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr13:97783200-97783800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr13:97783400-97784400	Enhancers	K562	blood
12	chr13:97783400-97792600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr13:97783600-97785000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links