Variant report

Variant	rs73389782
Chromosome Location	chr9:3645907-3645908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57887787	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61293217	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389729	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389730	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389734	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389744	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389756	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389758	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389761	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389763	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389765	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389769	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389771	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916259	chr9:3308176-4296711	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv1022795	chr9:3436845-3744623	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv892092	chr9:3565211-3687942	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1033417	chr9:3594189-3732530	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1021394	chr9:3594389-3728995	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1032487	chr9:3601907-3661151	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv892093	chr9:3613712-3696874	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
8	nsv892094	chr9:3631008-3783874	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3644800-3646000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:3645600-3647200	Enhancers	Brain Hippocampus Middle	brain
3	chr9:3645600-3647400	Enhancers	Fetal Brain Male	brain
4	chr9:3645800-3647000	Enhancers	Brain Anterior Caudate	brain
5	chr9:3645800-3647000	Enhancers	Fetal Brain Female	brain
6	chr9:3645800-3647400	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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