Variant report

Variant	rs73389860
Chromosome Location	chr10:119018161-119018162
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:119008981..119011778-chr10:119017026..119018993,2	MCF-7	breast:
2	chr10:119016058..119018983-chr10:119028187..119030646,3	K562	blood:
3	chr10:119017185..119019564-chr10:119022570..119024343,2	MCF-7	breast:
4	chr10:119017849..119020212-chr10:119021199..119022770,2	K562	blood:

rs_ID	r²[population]
rs73389865	0.88[AFR][1000 genomes]

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119009600-119018600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:119009800-119018400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:119011000-119019000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:119011200-119019600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:119011200-119020200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:119011400-119019400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:119014000-119019200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:119016000-119018600	Weak transcription	Thymus	Thymus
9	chr10:119016000-119018800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:119016000-119019600	Weak transcription	Ovary	ovary
11	chr10:119017400-119018400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:119017400-119034000	Weak transcription	Gastric	stomach
13	chr10:119017600-119018400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:119017600-119019000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:119017600-119019000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr10:119017600-119019400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:119017600-119019800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:119017800-119020600	Enhancers	Primary T cells from cord blood	blood
19	chr10:119018000-119019400	Enhancers	Brain Germinal Matrix	brain
20	chr10:119018000-119019600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links