Variant report

Variant	rs73391019
Chromosome Location	chr15:49963043-49963044
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58313645	0.93[AFR][1000 genomes]
rs73391026	1.00[AFR][1000 genomes]
rs73402185	0.86[AFR][1000 genomes]
rs73404194	0.93[AFR][1000 genomes]
rs73406077	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	esv3346839	chr15:49963027-49963330	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49957200-49965600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr15:49960400-49965400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:49961400-49963200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:49961800-49966800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:49962000-49966600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:49962200-49965800	Weak transcription	Osteobl	bone
7	chr15:49962400-49966600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:49962400-49966800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:49962800-49966800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:49963000-49963200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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