Variant report

Variant	rs73391360
Chromosome Location	chr15:40571944-40571945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40571286..40572270-chr15:40601478..40602969,9	MCF-7	breast:
2	chr15:40569275..40572340-chr15:40598555..40600997,3	K562	blood:
3	chr15:40567372..40572340-chr15:40598668..40601169,4	K562	blood:
4	chr15:40571488..40572288-chr15:40601921..40602727,4	MCF-7	breast:
5	chr15:40571102..40572197-chr15:40713394..40714385,6	MCF-7	breast:
6	chr15:40571544..40572394-chr15:40629960..40630610,3	K562	blood:
7	chr15:40571308..40572301-chr15:40601892..40603242,9	K562	blood:
8	chr15:40571419..40572182-chr15:40629949..40630680,2	MCF-7	breast:
9	chr15:40571284..40573045-chr15:40595754..40597845,2	K562	blood:
10	chr15:40571385..40572541-chr15:40629850..40630639,3	MCF-7	breast:
11	chr15:40569115..40573106-chr15:40573581..40578796,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137841	Chromatin interaction
ENSG00000230778	Chromatin interaction
ENSG00000188549	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs4142631	1.00[AMR][1000 genomes]
rs55738516	1.00[EUR][1000 genomes]
rs56874918	1.00[EUR][1000 genomes]
rs57314452	1.00[EUR][1000 genomes]
rs57767693	1.00[EUR][1000 genomes]
rs57856697	1.00[EUR][1000 genomes]
rs7174686	1.00[EUR][1000 genomes]
rs7180770	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391377	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74010790	1.00[EUR][1000 genomes]
rs74010791	1.00[EUR][1000 genomes]
rs74010792	1.00[EUR][1000 genomes]
rs74010793	1.00[EUR][1000 genomes]
rs74010794	1.00[EUR][1000 genomes]
rs74010796	1.00[EUR][1000 genomes]
rs8039484	1.00[EUR][1000 genomes]
rs8041180	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv904095	chr15:40525430-40591570	Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv471240	chr15:40528155-40595627	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	nsv904096	chr15:40550149-40604777	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv510660	chr15:40552906-40721883	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	nsv904097	chr15:40555065-40595627	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv517541	chr15:40557268-40595627	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	esv1850798	chr15:40560607-40622191	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
10	nsv904098	chr15:40564576-40586537	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv457118	chr15:40565705-40606484	Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv569227	chr15:40565705-40606484	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40567200-40572000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr15:40568000-40573400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:40569000-40573800	Weak transcription	Pancreas	Pancrea
4	chr15:40569200-40572000	Enhancers	Primary hematopoietic stem cells	blood
5	chr15:40569400-40572800	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr15:40569800-40572000	Enhancers	K562	blood
7	chr15:40570000-40572000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:40570400-40572200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:40570400-40572400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
10	chr15:40570800-40572000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
11	chr15:40571000-40572600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:40571000-40572800	Bivalent Enhancer	Fetal Lung	lung
13	chr15:40571000-40574600	Enhancers	Fetal Heart	heart
14	chr15:40571200-40572000	Bivalent Enhancer	Fetal Thymus	thymus
15	chr15:40571400-40572000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:40571400-40572000	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
17	chr15:40571400-40572000	Enhancers	Hela-S3	cervix
18	chr15:40571400-40572200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr15:40571400-40572600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
20	chr15:40571600-40572000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr15:40571600-40572000	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
22	chr15:40571600-40572000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
23	chr15:40571600-40572000	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
24	chr15:40571600-40572000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:40571600-40572000	Enhancers	Brain Hippocampus Middle	brain
26	chr15:40571600-40572000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
27	chr15:40571600-40572000	Enhancers	Placenta	Placenta
28	chr15:40571600-40572000	Enhancers	Dnd41	blood
29	chr15:40571600-40572000	Bivalent Enhancer	NHLF	lung
30	chr15:40571600-40572200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
31	chr15:40571600-40572200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:40571600-40572600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
33	chr15:40571600-40572800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
34	chr15:40571600-40573000	Bivalent Enhancer	Stomach Mucosa	stomach
35	chr15:40571600-40574000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
36	chr15:40571600-40576800	Bivalent Enhancer	Fetal Brain Male	brain
37	chr15:40571800-40572000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
38	chr15:40571800-40572000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
39	chr15:40571800-40572000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
40	chr15:40571800-40572000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:40571800-40572000	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr15:40571800-40572000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr15:40571800-40572000	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr15:40571800-40572000	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr15:40571800-40572000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
46	chr15:40571800-40572000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
47	chr15:40571800-40572000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
48	chr15:40571800-40572000	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr15:40571800-40572000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
50	chr15:40571800-40572000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin

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