Variant report

Variant	rs73392215
Chromosome Location	chr15:49494631-49494632
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49486635..49489834-chr15:49492357..49494920,3	K562	blood:
2	chr15:49486635..49490879-chr15:49492357..49495166,4	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73390358	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73390372	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73392219	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73392230	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73392279	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73394308	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49463200-49508200	Weak transcription	Ovary	ovary
2	chr15:49463600-49517600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:49463600-49527800	Weak transcription	HSMM	muscle
4	chr15:49463600-49540200	Weak transcription	Colonic Mucosa	Colon
5	chr15:49464400-49500000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:49465400-49508200	Weak transcription	Hela-S3	cervix
7	chr15:49472800-49497200	Weak transcription	Brain Anterior Caudate	brain
8	chr15:49478000-49496000	Weak transcription	Primary T cells from cord blood	blood
9	chr15:49478400-49497400	Weak transcription	Primary B cells from cord blood	blood
10	chr15:49480000-49510600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:49480200-49500200	Weak transcription	Spleen	Spleen
12	chr15:49480200-49502000	Weak transcription	Aorta	Aorta
13	chr15:49480200-49503800	Weak transcription	Esophagus	oesophagus
14	chr15:49480600-49503800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:49481600-49498600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:49483600-49497000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr15:49484200-49519400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr15:49484400-49497000	Weak transcription	Fetal Brain Male	brain
19	chr15:49487000-49510600	Weak transcription	Thymus	Thymus
20	chr15:49487200-49531200	Weak transcription	HMEC	breast
21	chr15:49488800-49496200	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:49489200-49508000	Weak transcription	Gastric	stomach
23	chr15:49489400-49496800	Weak transcription	HepG2	liver
24	chr15:49489400-49508200	Weak transcription	Pancreas	Pancrea
25	chr15:49489800-49499000	Weak transcription	Dnd41	blood
26	chr15:49490000-49499400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr15:49490800-49508400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:49491000-49495600	Weak transcription	HUVEC	blood vessel
29	chr15:49491400-49496000	Weak transcription	Left Ventricle	heart
30	chr15:49491400-49498000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:49491400-49510600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:49491600-49496600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:49491800-49494800	Weak transcription	Psoas Muscle	Psoas
34	chr15:49491800-49496800	Weak transcription	Fetal Muscle Leg	muscle
35	chr15:49492000-49495600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr15:49492000-49497400	Weak transcription	Brain Angular Gyrus	brain
37	chr15:49492000-49517600	Weak transcription	NHLF	lung
38	chr15:49492000-49520000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr15:49492000-49527800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr15:49492000-49530200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr15:49492000-49539400	Weak transcription	Small Intestine	intestine
42	chr15:49492200-49497600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr15:49492200-49499600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr15:49492200-49499600	Weak transcription	Fetal Lung	lung
45	chr15:49492200-49512800	Weak transcription	NHDF-Ad	bronchial
46	chr15:49492600-49503800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr15:49492800-49496400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr15:49492800-49497200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr15:49492800-49498000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr15:49492800-49514600	Weak transcription	Brain Inferior Temporal Lobe	brain

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