Variant report

Variant	rs73393614
Chromosome Location	chr9:11458499-11458500
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs57330343	1.00[AMR][1000 genomes]
rs59105980	1.00[AMR][1000 genomes]
rs60351826	1.00[AMR][1000 genomes]
rs7045629	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393643	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393649	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393654	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393680	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393688	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393689	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393696	1.00[AMR][1000 genomes]
rs73393701	1.00[AMR][1000 genomes]
rs73395606	1.00[AMR][1000 genomes]
rs73395607	1.00[AMR][1000 genomes]
rs73395614	1.00[AMR][1000 genomes]
rs73395624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401881	1.00[AMR][1000 genomes]
rs73405409	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405446	1.00[AMR][1000 genomes]
rs73409512	1.00[AMR][1000 genomes]
rs73409518	1.00[AMR][1000 genomes]
rs73409522	1.00[AMR][1000 genomes]
rs73409524	1.00[AMR][1000 genomes]
rs73409533	1.00[AMR][1000 genomes]
rs73411441	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033615	chr9:10972764-11530615	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv540000	chr9:10972764-11530615	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv8415	chr9:11173118-11631933	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv613420	chr9:11200588-11619839	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2752275	chr9:11224627-11583747	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2752276	chr9:11224627-11958106	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2755055	chr9:11262339-11952796	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1030293	chr9:11280403-11573645	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv540002	chr9:11280403-11573645	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1025869	chr9:11280403-11956480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv466183	chr9:11305052-11561438	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv613421	chr9:11305052-11561438	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv892343	chr9:11317902-11929890	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv915964	chr9:11318956-11530641	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1033078	chr9:11350249-12121365	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv540003	chr9:11350249-12121365	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv1024860	chr9:11408052-11577278	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv892351	chr9:11428893-11462758	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	nsv466185	chr9:11440880-11561385	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	nsv613428	chr9:11440880-11561385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	nsv1022653	chr9:11443236-11551014	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv892352	chr9:11449612-11487579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
23	nsv466186	chr9:11453474-11645495	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	nsv613429	chr9:11453474-11645495	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	nsv471281	chr9:11453474-11716862	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:11456400-11458800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr9:11457000-11458800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr9:11457200-11458600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:11457200-11459000	Enhancers	Fetal Heart	heart
5	chr9:11457600-11458600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr9:11457800-11459000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr9:11458000-11458600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:11458000-11458600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:11458000-11458800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr9:11458000-11458800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr9:11458000-11458800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:11458000-11458800	Enhancers	Fetal Kidney	kidney
13	chr9:11458000-11459000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr9:11458000-11459000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr9:11458200-11458600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:11458200-11458600	Enhancers	Placenta Amnion	Placenta Amnion
17	chr9:11458200-11458800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr9:11458200-11458800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:11458200-11458800	Enhancers	Brain Cingulate Gyrus	brain
20	chr9:11458200-11460000	Enhancers	Fetal Brain Male	brain
21	chr9:11458400-11458800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:11458400-11458800	Enhancers	Fetal Muscle Leg	muscle
23	chr9:11458400-11458800	Enhancers	Placenta	Placenta
24	chr9:11458400-11458800	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr9:11458400-11458800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr9:11458400-11459000	Enhancers	Fetal Brain Female	brain
27	chr9:11458400-11459800	Enhancers	Pancreatic Islets	Pancreatic Islet

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