Variant report

Variant	rs73393809
Chromosome Location	chr6:25422678-25422679
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11967455	1.00[AMR][1000 genomes]
rs73393812	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393831	1.00[AMR][1000 genomes]
rs73393834	1.00[AMR][1000 genomes]
rs73393836	1.00[AMR][1000 genomes]
rs73393839	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883485	chr6:25259137-25437986	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv830612	chr6:25342408-25509758	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1850810	chr6:25405576-25462543	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25411000-25451800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:25414600-25423600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:25415000-25446200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:25415200-25431800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:25415600-25424000	Weak transcription	Thymus	Thymus
6	chr6:25416200-25441000	Weak transcription	Fetal Thymus	thymus
7	chr6:25416200-25447800	Weak transcription	Pancreas	Pancrea
8	chr6:25416600-25427600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:25416600-25447800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:25417600-25431800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:25418000-25429200	Weak transcription	Aorta	Aorta
12	chr6:25418600-25426200	Weak transcription	Gastric	stomach
13	chr6:25418800-25462600	Weak transcription	Ovary	ovary
14	chr6:25419400-25430600	Weak transcription	Left Ventricle	heart
15	chr6:25419800-25429000	Weak transcription	Small Intestine	intestine
16	chr6:25420400-25423600	Weak transcription	Right Atrium	heart
17	chr6:25420600-25423600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:25420600-25423800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:25420600-25425400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:25420600-25426200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr6:25420600-25429400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:25420600-25432000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr6:25420800-25423600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:25420800-25431800	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr6:25420800-25431800	Weak transcription	Fetal Intestine Small	intestine
26	chr6:25420800-25436600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:25420800-25441800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr6:25420800-25445400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:25421000-25423400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr6:25421000-25423400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:25421000-25423800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr6:25421000-25431400	Weak transcription	Fetal Lung	lung
33	chr6:25421000-25431800	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:25421000-25438600	Weak transcription	Primary B cells from cord blood	blood
35	chr6:25421000-25440400	Weak transcription	Primary T cells from cord blood	blood
36	chr6:25421400-25423600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:25421400-25425200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:25421400-25425400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr6:25421400-25425600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:25421400-25429400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:25421400-25436400	Weak transcription	Fetal Intestine Large	intestine
42	chr6:25421400-25442200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:25421400-25446200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:25421600-25423000	Weak transcription	NHEK	skin
45	chr6:25421600-25432000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr6:25421600-25446200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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