Variant report

Variant	rs73394283
Chromosome Location	chr22:30961983-30961984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr22:30961983-30962427	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
GAL3ST1	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73881479	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829171	chr22:30598030-31043578	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	nsv588887	chr22:30953521-30995356	Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30939000-30962000	Weak transcription	Liver	Liver
2	chr22:30944800-30968000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr22:30950600-30969000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr22:30953800-30965200	Weak transcription	Gastric	stomach
5	chr22:30958000-30969600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr22:30958200-30964000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr22:30958800-30962200	Weak transcription	Stomach Mucosa	stomach
8	chr22:30959800-30962400	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr22:30960200-30962000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr22:30960200-30962000	Enhancers	HepG2	liver
11	chr22:30960200-30962200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr22:30960200-30962200	Enhancers	Brain Cingulate Gyrus	brain
13	chr22:30960200-30962400	Enhancers	Brain Hippocampus Middle	brain
14	chr22:30960200-30962400	Enhancers	Brain Substantia Nigra	brain
15	chr22:30960200-30962600	Enhancers	Brain Angular Gyrus	brain
16	chr22:30960400-30962600	Enhancers	A549	lung
17	chr22:30960800-30963200	Enhancers	Fetal Intestine Large	intestine
18	chr22:30960800-30969800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr22:30961000-30962200	Enhancers	Brain Anterior Caudate	brain
20	chr22:30961000-30962400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr22:30961000-30962600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr22:30961000-30967200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr22:30961000-30967800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr22:30961200-30964000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr22:30961200-30964200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr22:30961200-30964600	Weak transcription	Brain Germinal Matrix	brain
27	chr22:30961400-30962400	Enhancers	Duodenum Mucosa	Duodenum
28	chr22:30961400-30969400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr22:30961600-30962200	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr22:30961800-30962000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr22:30961800-30962600	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr22:30961800-30963200	Enhancers	Fetal Intestine Small	intestine
33	chr22:30961800-30968000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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