Variant report

Variant	rs73394790
Chromosome Location	chr9:6133348-6133349
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10121835	1.00[AMR][1000 genomes]
rs57504489	1.00[AMR][1000 genomes]
rs57845497	1.00[AMR][1000 genomes]
rs59223118	1.00[AMR][1000 genomes]
rs59350223	1.00[AMR][1000 genomes]
rs60389669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7039520	1.00[AMR][1000 genomes]
rs73394726	1.00[AMR][1000 genomes]
rs73394801	0.83[AFR][1000 genomes]
rs73396509	1.00[AMR][1000 genomes]
rs73396539	1.00[AMR][1000 genomes]
rs73396543	1.00[AMR][1000 genomes]
rs73396553	1.00[AMR][1000 genomes]
rs73396555	1.00[AMR][1000 genomes]
rs73396556	1.00[AMR][1000 genomes]
rs73396565	1.00[AMR][1000 genomes]
rs73396587	1.00[AMR][1000 genomes]
rs73398532	1.00[AMR][1000 genomes]
rs73398535	1.00[AMR][1000 genomes]
rs73398563	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948847	chr9:5712626-6417677	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1031086	chr9:5806949-6630686	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv539967	chr9:5806949-6630686	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv613205	chr9:6032924-6332901	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv916394	chr9:6055497-6322471	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2761482	chr9:6084602-6134787	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv892157	chr9:6093790-6322415	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv933124	chr9:6099101-6644738	Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
9	nsv831496	chr9:6101763-6285088	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6132400-6133800	Enhancers	GM12878-XiMat	blood
2	chr9:6132800-6135800	Enhancers	Hela-S3	cervix
3	chr9:6133000-6135400	Enhancers	HMEC	breast
4	chr9:6133200-6135600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:6133200-6135600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:6133200-6135600	Enhancers	NHEK	skin

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