Variant report
| Variant | rs73395548 |
|---|---|
| Chromosome Location | chr12:117341962-117341963 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000240100 | TF binding region |
| ENSG00000179922 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs58661666 | 1.00[AMR][1000 genomes] |
| rs7294581 | 1.00[AMR][1000 genomes] |
| rs73395573 | 1.00[AMR][1000 genomes] |
| rs73395576 | 1.00[AMR][1000 genomes] |
| rs73397415 | 1.00[AMR][1000 genomes] |
| rs73397440 | 1.00[AMR][1000 genomes] |
| rs73397442 | 1.00[AMR][1000 genomes] |
| rs73397454 | 1.00[AMR][1000 genomes] |
| rs73397475 | 1.00[AMR][1000 genomes] |
| rs73397493 | 1.00[AMR][1000 genomes] |
| rs73399498 | 1.00[AMR][1000 genomes] |
| rs73405269 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832524 | chr12:117314110-117496576 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
