Variant report

Variant	rs73395661
Chromosome Location	chr15:42282059-42282060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:42279835..42282375-chr15:42428549..42430558,3	K562	blood:
2	chr15:42281382..42282364-chr15:42348961..42349921,14	MCF-7	breast:
3	chr15:42281447..42282357-chr15:42763191..42763948,2	K562	blood:
4	chr15:42281486..42282251-chr15:42325577..42326393,2	MCF-7	breast:
5	chr15:42281317..42282400-chr15:42351270..42352690,6	MCF-7	breast:
6	chr15:42281454..42282334-chr15:42425835..42426353,2	K562	blood:
7	chr15:42279724..42282493-chr15:42437868..42440703,2	K562	blood:
8	chr15:42280977..42282364-chr15:42351630..42352545,8	K562	blood:
9	chr15:42281439..42282363-chr15:42376733..42377249,2	K562	blood:
10	chr15:42281486..42282397-chr15:42351630..42352563,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168907	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56725574	1.00[AMR][1000 genomes]
rs57770286	1.00[AMR][1000 genomes]
rs73395658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397812	1.00[AMR][1000 genomes]
rs73397889	1.00[AMR][1000 genomes]
rs73408954	1.00[AMR][1000 genomes]
rs73408959	1.00[AMR][1000 genomes]
rs73408960	1.00[AMR][1000 genomes]
rs73408963	1.00[AMR][1000 genomes]
rs7359222	1.00[AMR][1000 genomes]
rs8027232	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv427958	chr15:42051317-42301283	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1038933	chr15:42138456-42309087	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
5	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv1054728	chr15:42177772-42310009	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
8	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42273000-42301800	Weak transcription	Fetal Intestine Small	intestine
2	chr15:42273200-42288000	Weak transcription	Lung	lung
3	chr15:42273800-42290000	Weak transcription	Right Atrium	heart
4	chr15:42273800-42301800	Weak transcription	Esophagus	oesophagus
5	chr15:42276200-42287000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:42281400-42282400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr15:42281400-42282400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:42281400-42282800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:42281600-42282400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr15:42281600-42282400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr15:42281600-42282600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr15:42281600-42282600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr15:42281600-42282800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr15:42281600-42282800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:42281800-42282200	Enhancers	Fetal Muscle Leg	muscle
16	chr15:42282000-42282400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:42282000-42282400	Bivalent Enhancer	Hela-S3	cervix
18	chr15:42282000-42282600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr15:42282000-42282600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:42282000-42282600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr15:42282000-42282800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr15:42282000-42283000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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