Variant report

Variant	rs73395721
Chromosome Location	chr12:105490392-105490393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1196798	0.85[ASN][1000 genomes]
rs1196811	0.85[ASN][1000 genomes]
rs1345096	0.93[ASN][1000 genomes]
rs17036637	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17036705	1.00[EUR][1000 genomes]
rs17036728	1.00[EUR][1000 genomes]
rs2272491	1.00[EUR][1000 genomes]
rs2272494	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2289773	1.00[EUR][1000 genomes]
rs2293642	1.00[EUR][1000 genomes]
rs2305047	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2374449	0.93[ASN][1000 genomes]
rs3763992	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3794234	1.00[EUR][1000 genomes]
rs3794235	1.00[EUR][1000 genomes]
rs3817608	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4394911	0.87[AMR][1000 genomes]
rs4964331	0.93[ASN][1000 genomes]
rs59124570	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59586998	0.87[AMR][1000 genomes]
rs60985863	1.00[AMR][1000 genomes]
rs61005937	1.00[EUR][1000 genomes]
rs6539183	0.89[ASN][1000 genomes]
rs6539186	0.89[ASN][1000 genomes]
rs6539188	0.93[ASN][1000 genomes]
rs6539190	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6539193	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7132624	0.93[ASN][1000 genomes]
rs7132855	0.84[ASN][1000 genomes]
rs7299166	0.87[ASN][1000 genomes]
rs7299701	0.93[ASN][1000 genomes]
rs7300384	0.81[AFR][1000 genomes]
rs7302854	0.89[ASN][1000 genomes]
rs73395712	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7963877	0.89[ASN][1000 genomes]
rs7973422	0.89[ASN][1000 genomes]
rs9788027	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv832505	chr12:105315352-105497765	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv832506	chr12:105461274-105637561	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105487000-105493200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:105490200-105490600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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