Variant report

Variant	rs73396245
Chromosome Location	chr22:31791651-31791652
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:31738670..31747056-chr22:31790500..31799012,36	MCF-7	breast:
2	chr22:31790215..31792897-chr22:31793771..31797373,3	K562	blood:
3	chr22:31789927..31791884-chr22:31793432..31795429,2	K562	blood:

Variant related genes	Relation type
ENSG00000185721	Chromatin interaction
ENSG00000100105	Chromatin interaction
ENSG00000213888	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10154415	1.00[AMR][1000 genomes]
rs12165610	1.00[AMR][1000 genomes]
rs12167380	1.00[AMR][1000 genomes]
rs12169596	1.00[AMR][1000 genomes]
rs13433570	1.00[AMR][1000 genomes]
rs16989611	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16989642	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16989647	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16989655	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28374120	1.00[AMR][1000 genomes]
rs28760352	1.00[AMR][1000 genomes]
rs5749296	1.00[AMR][1000 genomes]
rs61049980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396248	0.87[AFR][1000 genomes]
rs73396261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396277	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396290	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396301	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398213	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398220	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73881392	1.00[AMR][1000 genomes]
rs73881394	1.00[AMR][1000 genomes]
rs73881395	1.00[AMR][1000 genomes]
rs9619201	1.00[AMR][1000 genomes]
rs9619202	1.00[AMR][1000 genomes]
rs9619209	1.00[AMR][1000 genomes]
rs9619213	1.00[AMR][1000 genomes]
rs9621271	1.00[AMR][1000 genomes]
rs9621273	1.00[AMR][1000 genomes]
rs9621274	1.00[AMR][1000 genomes]
rs9621276	1.00[AMR][1000 genomes]
rs9621277	1.00[AMR][1000 genomes]
rs9621281	1.00[AMR][1000 genomes]
rs9621283	1.00[AMR][1000 genomes]
rs9621284	1.00[AMR][1000 genomes]
rs9621293	1.00[AMR][1000 genomes]
rs9621297	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv1816779	chr22:31743711-31797094	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31790600-31794000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr22:31790800-31794800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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