Variant report

Variant	rs73397155
Chromosome Location	chr15:40098253-40098254
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:40097944-40098262	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40094870..40096704-chr15:40097944..40100228,2	K562	blood:
2	chr15:40096907..40099731-chr15:40116417..40118536,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259580	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs621970	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40076000-40103200	Weak transcription	Right Atrium	heart
2	chr15:40081400-40100200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:40089600-40099400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:40090400-40099000	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:40090400-40099400	Strong transcription	NHLF	lung
6	chr15:40091000-40102600	Weak transcription	Adipose Nuclei	Adipose
7	chr15:40091800-40099400	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:40094200-40100400	Weak transcription	Spleen	Spleen
9	chr15:40094400-40100000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:40094400-40100200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr15:40094400-40102400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:40094400-40109600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:40094400-40120400	Weak transcription	HSMMtube	muscle
14	chr15:40094600-40100000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr15:40095400-40099200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:40095400-40102600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr15:40095800-40099400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:40095800-40099400	Strong transcription	HSMM	muscle
19	chr15:40096000-40099400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr15:40096000-40099400	Strong transcription	Osteobl	bone
21	chr15:40096200-40099200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr15:40096200-40120400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:40096400-40098400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr15:40096400-40100000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr15:40096600-40101000	Weak transcription	NH-A	brain
26	chr15:40096800-40098800	Strong transcription	NHDF-Ad	bronchial
27	chr15:40096800-40111600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr15:40097200-40102400	Weak transcription	HMEC	breast
29	chr15:40097200-40110000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr15:40097400-40099200	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr15:40097400-40099400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:40097600-40099400	Strong transcription	Aorta	Aorta
33	chr15:40097600-40100400	Weak transcription	NHEK	skin
34	chr15:40097800-40099400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:40098200-40098800	Weak transcription	H9 Cell Line	embryonic stem cell

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