Variant report

Variant	rs73397399
Chromosome Location	chr15:40657724-40657725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40649702..40654099-chr15:40655704..40659247,4	K562	blood:
2	chr15:40648717..40650505-chr15:40656910..40660408,3	MCF-7	breast:
3	chr15:40657655..40660489-chr15:40672219..40675457,3	K562	blood:

Variant related genes	Relation type
ENSG00000140323	Chromatin interaction
ENSG00000128944	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58467866	1.00[AMR][1000 genomes]
rs73399311	1.00[AMR][1000 genomes]
rs8041293	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv510660	chr15:40552906-40721883	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40651200-40659200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:40651200-40659200	Weak transcription	Esophagus	oesophagus
3	chr15:40651200-40659200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:40651200-40659400	Weak transcription	Thymus	Thymus
5	chr15:40651400-40657800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr15:40651400-40657800	Weak transcription	Brain Substantia Nigra	brain
7	chr15:40651400-40657800	Weak transcription	Pancreas	Pancrea
8	chr15:40651400-40658200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr15:40651400-40658200	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:40651400-40658400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr15:40651400-40658400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr15:40651400-40658800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:40651400-40658800	Weak transcription	Gastric	stomach
14	chr15:40651400-40659000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr15:40651400-40659200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr15:40651400-40659200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:40651400-40659200	Weak transcription	Spleen	Spleen
18	chr15:40651600-40658600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr15:40651600-40658600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:40651600-40658800	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr15:40651600-40658800	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr15:40651600-40659000	Weak transcription	Primary B cells from cord blood	blood
23	chr15:40651600-40659600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:40651800-40658000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr15:40651800-40658800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr15:40651800-40658800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr15:40652000-40658000	Weak transcription	Brain Angular Gyrus	brain
28	chr15:40655200-40658000	Weak transcription	Primary T cells from cord blood	blood
29	chr15:40655600-40658400	Strong transcription	Brain Germinal Matrix	brain
30	chr15:40655600-40659600	Weak transcription	Fetal Intestine Small	intestine
31	chr15:40655800-40659400	Enhancers	Primary T cells fromperipheralblood	blood
32	chr15:40656000-40658200	Strong transcription	Fetal Brain Female	brain
33	chr15:40656200-40661000	Enhancers	Fetal Heart	heart
34	chr15:40656400-40657800	Enhancers	NHEK	skin
35	chr15:40656600-40657800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr15:40656600-40659600	Enhancers	Right Ventricle	heart
37	chr15:40656600-40660000	Weak transcription	A549	lung
38	chr15:40656800-40659000	Weak transcription	Brain Anterior Caudate	brain
39	chr15:40657000-40659000	Weak transcription	Stomach Mucosa	stomach
40	chr15:40657000-40659400	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr15:40657000-40659800	Weak transcription	K562	blood
42	chr15:40657000-40660000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
43	chr15:40657200-40659400	Enhancers	Fetal Muscle Leg	muscle
44	chr15:40657200-40659800	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr15:40657200-40660000	Enhancers	Left Ventricle	heart
46	chr15:40657400-40658000	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr15:40657400-40659200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:40657400-40659400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr15:40657400-40659400	Weak transcription	HMEC	breast
50	chr15:40657400-40659600	Weak transcription	Psoas Muscle	Psoas

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