Variant report

Variant	rs73397400
Chromosome Location	chr15:40665445-40665446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr15:40665076-40665547	HL-60	blood:	n/a	chr15:40665320-40665333
2	STAT3	chr15:40665431-40665631	MCF10A-Er-Src	breast:	n/a	n/a
3	SPI1	chr15:40665027-40665644	HL-60	blood:	n/a	chr15:40665320-40665333
4	MAFK	chr15:40665317-40665591	IMR90	lung:	n/a	n/a
5	FOS	chr15:40665252-40665728	HUVEC	blood vessel:	n/a	chr15:40665436-40665447
6	MAFK	chr15:40665422-40665477	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:40660534..40665869-chr15:40673827..40676646,4	K562	blood:
2	chr15:40658920..40662804-chr15:40663316..40668232,4	MCF-7	breast:
3	chr15:40661633..40663209-chr15:40664066..40666286,2	K562	blood:
4	chr15:40663732..40667062-chr15:40674726..40678158,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259368	TF binding region
ENSG00000261374	TF binding region
ENSG00000259368	Chromatin interaction
ENSG00000128944	Chromatin interaction
ENSG00000140323	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56864155	0.92[AFR][1000 genomes]
rs60249621	0.92[AFR][1000 genomes]
rs73383142	0.85[AFR][1000 genomes]
rs73383148	0.85[AFR][1000 genomes]
rs73391374	1.00[AMR][1000 genomes]
rs73397308	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv510660	chr15:40552906-40721883	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40660800-40674800	Weak transcription	Esophagus	oesophagus
2	chr15:40661000-40669600	Weak transcription	HSMM	muscle
3	chr15:40661000-40671400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:40661200-40674800	Weak transcription	Fetal Brain Male	brain
5	chr15:40661600-40674600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:40663200-40674800	Weak transcription	Brain Germinal Matrix	brain
7	chr15:40663800-40674200	Weak transcription	Right Ventricle	heart
8	chr15:40664000-40665600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr15:40664000-40665800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:40664400-40665600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr15:40664400-40665600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr15:40664400-40665600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr15:40664600-40665600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr15:40664600-40665600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr15:40664600-40665600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr15:40664600-40665600	Enhancers	Osteobl	bone
17	chr15:40664600-40665800	Enhancers	H9 Cell Line	embryonic stem cell
18	chr15:40664600-40665800	Enhancers	HUVEC	blood vessel
19	chr15:40664600-40665800	Enhancers	NHDF-Ad	bronchial
20	chr15:40664800-40665600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr15:40664800-40665600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr15:40664800-40665600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:40664800-40665600	Enhancers	Adipose Nuclei	Adipose
24	chr15:40664800-40665600	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr15:40665000-40665600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:40665000-40665800	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr15:40665000-40665800	Enhancers	Placenta	Placenta
28	chr15:40665200-40665600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:40665200-40671400	Weak transcription	Spleen	Spleen
30	chr15:40665200-40674800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr15:40665200-40674800	Weak transcription	Fetal Brain Female	brain
32	chr15:40665400-40665600	Enhancers	NHEK	skin
33	chr15:40665400-40669600	Weak transcription	HSMMtube	muscle
34	chr15:40665400-40674800	Weak transcription	Fetal Lung	lung

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