Variant report

Variant	rs73398445
Chromosome Location	chr6:24863514-24863515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24860248..24864076-chr6:24865676..24868318,4	K562	blood:
2	chr6:24857230..24860710-chr6:24861269..24864653,3	K562	blood:
3	chr6:24862137..24864076-chr6:24866357..24867880,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs3763224	1.00[AFR][1000 genomes]
rs73398426	1.00[AMR][1000 genomes]
rs73398430	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398457	1.00[AMR][1000 genomes]
rs73398459	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24843800-24879400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:24844600-24873200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:24846200-24873400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:24846800-24866000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:24847000-24876600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:24849000-24864600	Weak transcription	Brain Germinal Matrix	brain
7	chr6:24850800-24864600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:24854400-24869400	Genic enhancers	Primary B cells from peripheral blood	blood
9	chr6:24855200-24895000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:24855600-24866000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr6:24855800-24863800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:24855800-24874200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:24856000-24863800	Genic enhancers	Fetal Thymus	thymus
14	chr6:24856000-24872200	Genic enhancers	Primary T cells fromperipheralblood	blood
15	chr6:24856200-24876400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:24856200-24882400	Weak transcription	NHLF	lung
17	chr6:24856400-24877200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:24857200-24864800	Strong transcription	Skeletal Muscle Male	skeletal muscle
19	chr6:24857200-24865600	Strong transcription	H9 Cell Line	embryonic stem cell
20	chr6:24857400-24865800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:24857400-24866000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:24857400-24866000	Strong transcription	Thymus	Thymus
23	chr6:24857600-24866000	Strong transcription	HSMMtube	muscle
24	chr6:24857600-24869200	Weak transcription	Fetal Brain Male	brain
25	chr6:24857600-24870200	Weak transcription	Fetal Brain Female	brain
26	chr6:24858000-24863600	Strong transcription	Fetal Muscle Trunk	muscle
27	chr6:24858000-24865600	Strong transcription	Dnd41	blood
28	chr6:24858000-24866000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:24858200-24865800	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr6:24858400-24865400	Weak transcription	Brain Angular Gyrus	brain
31	chr6:24858400-24865800	Strong transcription	Placenta Amnion	Placenta Amnion
32	chr6:24858600-24863600	Weak transcription	Fetal Heart	heart
33	chr6:24858600-24876000	Weak transcription	Right Ventricle	heart
34	chr6:24858800-24876600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr6:24859200-24864200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:24859200-24864800	Weak transcription	Liver	Liver
37	chr6:24859200-24864800	Weak transcription	Left Ventricle	heart
38	chr6:24859200-24865800	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr6:24859200-24867000	Weak transcription	Brain Substantia Nigra	brain
40	chr6:24859200-24867800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr6:24859200-24868000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:24859200-24869400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr6:24859200-24869600	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr6:24859200-24873200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:24859200-24873200	Strong transcription	Placenta	Placenta
46	chr6:24859200-24877000	Weak transcription	Gastric	stomach
47	chr6:24859200-24877000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr6:24859200-24877200	Weak transcription	Lung	lung
49	chr6:24859400-24864000	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr6:24859400-24866000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--

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