Variant report

Variant	rs73399034
Chromosome Location	chr22:29595863-29595864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29588962..29590714-chr22:29595745..29598495,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs58306818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59016854	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61615024	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397067	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397081	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397085	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397093	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397095	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399003	1.00[AMR][1000 genomes]
rs73399007	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399012	1.00[AMR][1000 genomes]
rs73399014	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399017	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399023	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399025	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399041	1.00[AMR][1000 genomes]
rs73399043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399048	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399052	1.00[AMR][1000 genomes]
rs73399056	1.00[AMR][1000 genomes]
rs73399059	1.00[AMR][1000 genomes]
rs9620871	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv524483	chr22:29525126-29630337	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv914958	chr22:29586058-29620599	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1809952	chr22:29595349-29661434	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29581600-29598400	Weak transcription	Fetal Brain Female	brain
2	chr22:29588000-29598200	Weak transcription	Fetal Brain Male	brain
3	chr22:29589600-29597800	Weak transcription	Fetal Intestine Large	intestine
4	chr22:29592000-29597800	Weak transcription	Fetal Lung	lung
5	chr22:29592200-29596400	Weak transcription	Spleen	Spleen
6	chr22:29592200-29597000	Weak transcription	Fetal Thymus	thymus
7	chr22:29592200-29598000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr22:29592400-29597000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr22:29592400-29598000	Weak transcription	Left Ventricle	heart
10	chr22:29592400-29598200	Weak transcription	Lung	lung
11	chr22:29592600-29597600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr22:29593400-29597800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr22:29593600-29597200	Weak transcription	K562	blood
14	chr22:29594000-29598000	Weak transcription	Small Intestine	intestine
15	chr22:29594800-29600800	Weak transcription	Pancreas	Pancrea
16	chr22:29595400-29597600	Enhancers	GM12878-XiMat	blood
17	chr22:29595600-29596200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr22:29595600-29597200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr22:29595600-29597600	Genic enhancers	Dnd41	blood
20	chr22:29595800-29596600	Strong transcription	Fetal Intestine Small	intestine
21	chr22:29595800-29597200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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