Variant report

Variant	rs73399231
Chromosome Location	chr12:117086844-117086845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57159759	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399213	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560321	chr12:117083560-117087901	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv560322	chr12:117083560-117088109	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1816116	chr12:117084285-117088109	Bivalent Enhancer Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv560323	chr12:117084285-117088109	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3492852	chr12:117086484-117088507	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv7478	chr12:117086655-117088382	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
7	esv3492896	chr12:117086740-117088304	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	esv3492841	chr12:117086790-117088265	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	esv3492874	chr12:117086802-117088270	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
10	esv3492863	chr12:117086804-117088234	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv3209	chr12:117086820-117088319	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117080600-117088000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:117080600-117088000	Weak transcription	Adipose Nuclei	Adipose
3	chr12:117083200-117088200	Weak transcription	Right Atrium	heart
4	chr12:117084000-117088000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr12:117084000-117088400	Weak transcription	Lung	lung
6	chr12:117084000-117093200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:117084200-117088000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr12:117084600-117088200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:117085200-117087400	Enhancers	Fetal Thymus	thymus
10	chr12:117086400-117087800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr12:117086600-117088000	Weak transcription	Pancreas	Pancrea
12	chr12:117086600-117088000	Weak transcription	Dnd41	blood
13	chr12:117086800-117088200	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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