Variant report

Variant	rs73400695
Chromosome Location	chr22:30514553-30514554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56836109	0.82[AFR][1000 genomes]
rs57631440	0.82[AFR][1000 genomes]
rs58898724	1.00[AMR][1000 genomes]
rs58972070	1.00[AMR][1000 genomes]
rs60022678	0.87[AFR][1000 genomes]
rs60615268	0.83[AMR][1000 genomes]
rs73396837	0.82[AFR][1000 genomes]
rs73396883	0.82[AFR][1000 genomes]
rs73396894	0.82[AFR][1000 genomes]
rs73398645	0.92[AFR][1000 genomes]
rs73398653	0.87[AFR][1000 genomes]
rs73398671	0.87[AFR][1000 genomes]
rs73398701	0.87[AFR][1000 genomes]
rs73400604	0.87[AFR][1000 genomes]
rs73400618	0.87[AFR][1000 genomes]
rs73400625	0.87[AFR][1000 genomes]
rs73400627	0.87[AFR][1000 genomes]
rs73400629	0.87[AFR][1000 genomes]
rs73400673	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402651	1.00[AMR][1000 genomes]
rs73402686	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv588884	chr22:30494371-30590026	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30513400-30518600	Weak transcription	A549	lung
2	chr22:30514000-30514800	Enhancers	Fetal Lung	lung
3	chr22:30514200-30515400	Enhancers	HepG2	liver
4	chr22:30514400-30514800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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