Variant report

Variant	rs73401111
Chromosome Location	chr15:40214437-40214438
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EIF2AK4-1	chr15:40213271-40218081	ENSG00000246863.2

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59802904	1.00[AMR][1000 genomes]
rs60442728	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73384358	1.00[AMR][1000 genomes]
rs73401126	1.00[AMR][1000 genomes]
rs73401127	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40213400-40214800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:40213600-40214600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:40213600-40214800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:40213600-40217600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:40213600-40225000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:40213600-40225400	Weak transcription	Pancreas	Pancrea
7	chr15:40213800-40214600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr15:40213800-40214800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:40213800-40214800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:40213800-40214800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr15:40213800-40214800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:40213800-40214800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:40213800-40214800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:40213800-40214800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr15:40213800-40215000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:40213800-40215000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr15:40213800-40215200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr15:40213800-40215200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:40213800-40215200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:40213800-40215200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr15:40213800-40215200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:40213800-40215200	Enhancers	NHDF-Ad	bronchial
23	chr15:40213800-40215200	Enhancers	Osteobl	bone
24	chr15:40213800-40216600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:40213800-40217400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:40213800-40217400	Weak transcription	HSMMtube	muscle
27	chr15:40213800-40217400	Weak transcription	HUVEC	blood vessel
28	chr15:40213800-40217400	Weak transcription	NH-A	brain
29	chr15:40213800-40217600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:40213800-40217800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr15:40213800-40225800	Weak transcription	Right Atrium	heart
32	chr15:40214000-40214800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr15:40214000-40214800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:40214000-40215000	Enhancers	GM12878-XiMat	blood
35	chr15:40214000-40215400	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr15:40214000-40216400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:40214000-40216800	Weak transcription	K562	blood
38	chr15:40214000-40217400	Weak transcription	Hela-S3	cervix
39	chr15:40214200-40214600	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr15:40214400-40215000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:40214400-40215000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr15:40214400-40215200	Enhancers	H9 Cell Line	embryonic stem cell
43	chr15:40214400-40215200	Enhancers	HMEC	breast
44	chr15:40214400-40215200	Enhancers	HSMM	muscle
45	chr15:40214400-40215200	Enhancers	NHLF	lung
46	chr15:40214400-40215400	Enhancers	NHEK	skin
47	chr15:40214400-40215600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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