Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11068425	1.00[ASN][1000 genomes]
rs12318813	1.00[AMR][1000 genomes]
rs2291909	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2293053	1.00[ASN][1000 genomes]
rs3782198	0.96[ASN][1000 genomes]
rs41432944	0.84[ASN][1000 genomes]
rs58807700	1.00[ASN][1000 genomes]
rs73401892	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7960451	0.90[ASN][1000 genomes]
rs9658449	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9658450	0.89[ASN][1000 genomes]
rs9658462	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9658463	1.00[ASN][1000 genomes]
rs9658492	1.00[AMR][1000 genomes]
rs9658496	0.84[ASN][1000 genomes]
rs9658500	1.00[AMR][1000 genomes]
rs9658501	0.84[ASN][1000 genomes]
rs9658503	1.00[AMR][1000 genomes]
rs9658508	0.84[ASN][1000 genomes]
rs9658512	0.84[ASN][1000 genomes]
rs9658515	0.84[ASN][1000 genomes]
rs9658532	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832526	chr12:117530234-117723821	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117651800-117696000	Weak transcription	Brain Anterior Caudate	brain
2	chr12:117660000-117727400	Weak transcription	Psoas Muscle	Psoas
3	chr12:117666200-117704200	Weak transcription	Brain Angular Gyrus	brain
4	chr12:117670000-117687800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:117674800-117706600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr12:117687000-117688000	ZNF genes & repeats	NHEK	skin
7	chr12:117687400-117695800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:117687600-117690600	Weak transcription	Brain Substantia Nigra	brain
9	chr12:117687600-117691800	Strong transcription	Skeletal Muscle Male	skeletal muscle
10	chr12:117687600-117691800	Strong transcription	Skeletal Muscle Female	skeletal muscle

Quick Search: