Variant report

Variant	rs73402202
Chromosome Location	chr22:32121672-32121673
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32120656..32124590-chr22:32143018..32145052,3	K562	blood:
2	22:32119939-32122852..22:32334260-32338420	H1-hESC	embryonic stem cell:	embryo
3	chr22:32110777..32113551-chr22:32120326..32122209,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128254	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16989400	0.87[AFR][1000 genomes]
rs16989409	0.87[AFR][1000 genomes]
rs58270979	0.87[AFR][1000 genomes]
rs58688967	0.87[AFR][1000 genomes]
rs59046624	0.87[AFR][1000 genomes]
rs61057100	0.87[AFR][1000 genomes]
rs61461793	0.87[AFR][1000 genomes]
rs73402174	0.87[AFR][1000 genomes]
rs73402179	0.87[AFR][1000 genomes]
rs73402184	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060929	chr22:32102701-32176860	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32078800-32126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr22:32081200-32126400	Weak transcription	Stomach Mucosa	stomach
3	chr22:32089400-32126000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr22:32102800-32123000	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr22:32103000-32125000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr22:32105000-32124000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr22:32105000-32124200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr22:32105200-32123600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr22:32105400-32124200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr22:32105800-32123200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr22:32105800-32124600	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr22:32105800-32125000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr22:32106400-32122800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr22:32107600-32124000	Strong transcription	Placenta	Placenta
15	chr22:32109600-32128200	Weak transcription	Pancreas	Pancrea
16	chr22:32111800-32122800	Weak transcription	Right Ventricle	heart
17	chr22:32112200-32142000	Weak transcription	Hela-S3	cervix
18	chr22:32112200-32145000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr22:32113000-32123800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr22:32113200-32122800	Weak transcription	Psoas Muscle	Psoas
21	chr22:32113200-32132600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr22:32113400-32123000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr22:32113400-32130400	Weak transcription	NH-A	brain
24	chr22:32113400-32143800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr22:32113600-32134800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr22:32113600-32142000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr22:32113800-32126200	Strong transcription	Fetal Intestine Small	intestine
28	chr22:32114600-32122000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr22:32114600-32124200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr22:32114600-32125200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr22:32114600-32125200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr22:32114600-32129400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr22:32114800-32121800	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr22:32114800-32127200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr22:32114800-32127400	Strong transcription	Fetal Stomach	stomach
36	chr22:32115000-32121800	Strong transcription	Primary B cells from cord blood	blood
37	chr22:32115000-32122000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr22:32115000-32122400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr22:32115000-32123600	Strong transcription	Fetal Intestine Large	intestine
40	chr22:32115000-32124200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr22:32115000-32124200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr22:32115200-32124200	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr22:32115400-32121800	Strong transcription	Duodenum Mucosa	Duodenum
44	chr22:32115600-32126800	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr22:32115800-32123200	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr22:32116000-32128400	Weak transcription	Small Intestine	intestine
47	chr22:32117600-32124200	Strong transcription	Primary B cells from peripheral blood	blood
48	chr22:32117800-32123400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr22:32118600-32122800	Strong transcription	Fetal Muscle Leg	muscle
50	chr22:32118800-32121800	Strong transcription	Fetal Lung	lung

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