Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr2:95535899-95537070	A549	lung:	n/a	chr2:95536608-95536615 chr2:95536268-95536286 chr2:95536435-95536448
2	EBF1	chr2:95536608-95536849	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
TEKT4	TF binding region

rSNPs within LD-proxies of this variant (count:3)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000661	chr2:95327875-95739468	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1005016	chr2:95327875-95914467	Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv2759075	chr2:95358799-95620108	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:95528200-95537400	Weak transcription	Gastric	stomach
2	chr2:95534200-95549400	Weak transcription	Right Atrium	heart
3	chr2:95535800-95537200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr2:95536200-95536800	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:95536200-95538200	ZNF genes & repeats	Lung	lung
6	chr2:95536400-95536800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:95536400-95537000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:95536400-95537200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
9	chr2:95536400-95537400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr2:95536400-95537400	Bivalent Enhancer	Adipose Nuclei	Adipose
11	chr2:95536400-95537600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr2:95536400-95537600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr2:95536400-95537800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr2:95536600-95536800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:95536600-95537000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
16	chr2:95536600-95537200	Weak transcription	Pancreas	Pancrea
17	chr2:95536600-95537600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
18	chr2:95536600-95537800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
19	chr2:95536600-95537800	Bivalent Enhancer	Fetal Lung	lung
20	chr2:95536600-95538000	Bivalent Enhancer	Placenta	Placenta

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