Variant report

Variant	rs73402906
Chromosome Location	chr15:50399410-50399411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28425676	0.84[EUR][1000 genomes]
rs4544194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174127	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73400841	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73402903	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8030667	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv569395	chr15:50345393-50437494	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50397200-50401000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:50398400-50399800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:50398800-50403200	Enhancers	Primary T cells from cord blood	blood
4	chr15:50399000-50400400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:50399200-50399800	Enhancers	Primary hematopoietic stem cells	blood
6	chr15:50399200-50399800	Enhancers	GM12878-XiMat	blood
7	chr15:50399200-50403000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr15:50399200-50407200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr15:50399400-50399600	Enhancers	Duodenum Mucosa	Duodenum
10	chr15:50399400-50399800	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr15:50399400-50400600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr15:50399400-50400600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr15:50399400-50401400	Enhancers	Primary B cells from peripheral blood	blood
14	chr15:50399400-50402000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr15:50399400-50402000	Enhancers	Fetal Thymus	thymus
16	chr15:50399400-50402200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:50399400-50402200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:50399400-50403800	Enhancers	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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