Variant report

Variant	rs73403908
Chromosome Location	chr9:13938910-13938911
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12004547	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931120	1.00[ASN][1000 genomes]
rs56135908	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56735617	1.00[ASN][1000 genomes]
rs60448191	0.86[EUR][1000 genomes]
rs73648433	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73648437	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1015319	chr9:13931836-13970419	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv613636	chr9:13936438-13975480	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13933600-13939000	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:13933600-13939600	Weak transcription	Adipose Nuclei	Adipose
3	chr9:13933600-13939600	Weak transcription	Left Ventricle	heart
4	chr9:13933600-13961600	Weak transcription	Psoas Muscle	Psoas
5	chr9:13936200-13942000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr9:13937400-13939400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:13937400-13940000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr9:13937800-13939800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:13938000-13939800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:13938000-13940000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:13938000-13940600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:13938000-13943000	Enhancers	Fetal Lung	lung
13	chr9:13938200-13939800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:13938200-13940800	Enhancers	HMEC	breast
15	chr9:13938200-13941000	Enhancers	Fetal Heart	heart
16	chr9:13938400-13939800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:13938400-13940800	Enhancers	Osteobl	bone
18	chr9:13938400-13948000	Weak transcription	Right Ventricle	heart
19	chr9:13938600-13939000	Enhancers	HSMMtube	muscle
20	chr9:13938600-13939800	Enhancers	Fetal Stomach	stomach
21	chr9:13938600-13940000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:13938600-13940000	Enhancers	Hela-S3	cervix
23	chr9:13938600-13940000	Enhancers	NHDF-Ad	bronchial
24	chr9:13938600-13940200	Enhancers	HUVEC	blood vessel
25	chr9:13938600-13942000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr9:13938800-13939000	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr9:13938800-13939400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr9:13938800-13939600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:13938800-13939600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr9:13938800-13939800	Enhancers	Stomach Smooth Muscle	stomach
31	chr9:13938800-13940000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:13938800-13940000	Enhancers	Aorta	Aorta
33	chr9:13938800-13940200	Enhancers	Ovary	ovary
34	chr9:13938800-13940600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:13938800-13940600	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links