Variant report

Variant	rs73403946
Chromosome Location	chr9:13971454-13971455
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10511586	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59886104	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73403922	0.87[AFR][1000 genomes]
rs73403935	0.83[AFR][1000 genomes]
rs73403948	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7869755	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv613636	chr9:13936438-13975480	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv892594	chr9:13970372-14005286	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13967800-13971600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:13968000-13971600	Weak transcription	Fetal Lung	lung
3	chr9:13969600-13972400	Enhancers	Left Ventricle	heart
4	chr9:13970000-13971600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:13970200-13972800	Enhancers	Fetal Heart	heart
6	chr9:13970600-13971600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:13970600-13971600	Weak transcription	Right Atrium	heart
8	chr9:13970600-13971600	Weak transcription	Right Ventricle	heart
9	chr9:13970600-13972400	Weak transcription	Psoas Muscle	Psoas
10	chr9:13970800-13976600	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:13971000-13971600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:13971400-13972200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr9:13971400-13972200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:13971400-13972400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:13971400-13972600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:13971400-13972600	Enhancers	HUVEC	blood vessel
17	chr9:13971400-13973000	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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