Variant report

Variant	rs73404154
Chromosome Location	chr22:32214494-32214495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr22:32214400-32214550	HVMF	connective:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32213023..32215994-chr22:32340622..32343238,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236132	TF binding region
DEPDC5	TF binding region
ENSG00000128254	Chromatin interaction
ENSG00000128245	Chromatin interaction

rs_ID	r²[population]
rs16989400	0.86[AFR][1000 genomes]
rs16989409	0.86[AFR][1000 genomes]
rs16989525	1.00[AFR][1000 genomes]
rs58270979	0.86[AFR][1000 genomes]
rs58688967	0.86[AFR][1000 genomes]
rs59046624	0.86[AFR][1000 genomes]
rs61057100	0.86[AFR][1000 genomes]
rs61461793	0.86[AFR][1000 genomes]
rs73402174	0.86[AFR][1000 genomes]
rs73402179	0.86[AFR][1000 genomes]
rs73402184	0.86[AFR][1000 genomes]
rs73404109	1.00[AFR][1000 genomes]
rs73404111	1.00[AFR][1000 genomes]
rs73404135	0.82[AFR][1000 genomes]
rs73404159	1.00[AFR][1000 genomes]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32151400-32217400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr22:32172200-32254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr22:32172800-32221000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr22:32187800-32222000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr22:32188000-32220000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr22:32188600-32222600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr22:32188800-32259600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr22:32189800-32225200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr22:32192400-32242200	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr22:32192400-32251000	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr22:32192400-32266600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr22:32192800-32220000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr22:32193000-32250600	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr22:32193200-32226800	Strong transcription	Fetal Muscle Trunk	muscle
15	chr22:32193200-32228400	Strong transcription	Adipose Nuclei	Adipose
16	chr22:32193200-32246000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr22:32193200-32250600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr22:32193400-32220200	Strong transcription	Primary B cells from peripheral blood	blood
19	chr22:32196600-32224800	Weak transcription	Hela-S3	cervix
20	chr22:32197200-32251000	Strong transcription	Primary B cells from cord blood	blood
21	chr22:32197400-32219800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr22:32203200-32216800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr22:32204800-32225800	Strong transcription	Duodenum Smooth Muscle	Duodenum
24	chr22:32205000-32219600	Strong transcription	Brain Hippocampus Middle	brain
25	chr22:32205000-32220000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr22:32205000-32228200	Strong transcription	Fetal Muscle Leg	muscle
27	chr22:32205000-32228600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr22:32205200-32219200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr22:32205200-32225200	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr22:32205200-32226600	Strong transcription	Fetal Thymus	thymus
31	chr22:32205200-32257600	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr22:32206200-32219600	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr22:32206400-32225600	Strong transcription	Left Ventricle	heart
34	chr22:32206600-32220200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr22:32207200-32222000	Strong transcription	Rectal Smooth Muscle	rectum
36	chr22:32207400-32220000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
37	chr22:32207800-32244000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr22:32209000-32219200	Strong transcription	Brain Inferior Temporal Lobe	brain
39	chr22:32209000-32219600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr22:32209000-32245800	Strong transcription	Primary T cells from cord blood	blood
41	chr22:32209000-32254600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr22:32209200-32226600	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr22:32209400-32218200	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr22:32209400-32225600	Weak transcription	Stomach Mucosa	stomach
45	chr22:32209600-32222600	Strong transcription	Spleen	Spleen
46	chr22:32210000-32221400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr22:32210000-32222200	Strong transcription	Brain Germinal Matrix	brain
48	chr22:32210200-32219200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr22:32210200-32219200	Strong transcription	Brain Cingulate Gyrus	brain
50	chr22:32210200-32219400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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