Variant report

Variant	rs73404215
Chromosome Location	chr15:49257910-49257911
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr15:49257561-49259900	IMR90	lung:	n/a	n/a
2	SMC3	chr15:49257908-49258780	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49153598..49154690-chr15:49257887..49259127,7	MCF-7	breast:

Variant related genes	Relation type
SHC4	TF binding region

rs_ID	r²[population]
rs10775138	1.00[AMR][1000 genomes]
rs7174409	1.00[AMR][1000 genomes]
rs73404249	1.00[AMR][1000 genomes]
rs73406114	1.00[AMR][1000 genomes]
rs73406124	1.00[AMR][1000 genomes]
rs73406137	1.00[AMR][1000 genomes]

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49256000-49259200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:49256400-49258200	Weak transcription	HSMM	muscle
3	chr15:49256400-49258600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:49256400-49259800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:49256400-49266800	Weak transcription	Brain Substantia Nigra	brain
6	chr15:49256400-49267200	Weak transcription	Aorta	Aorta
7	chr15:49256600-49258000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:49256600-49258200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:49256600-49258200	Weak transcription	NHDF-Ad	bronchial
10	chr15:49256600-49258400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:49256600-49258400	Weak transcription	HSMMtube	muscle
12	chr15:49256600-49258400	Weak transcription	NH-A	brain
13	chr15:49256600-49258400	Weak transcription	NHLF	lung
14	chr15:49256600-49258400	Weak transcription	Osteobl	bone
15	chr15:49256600-49258600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:49256600-49259000	Enhancers	Hela-S3	cervix
17	chr15:49256600-49259600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:49256800-49258400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr15:49256800-49265200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr15:49257000-49258200	Bivalent Enhancer	Primary T cells from cord blood	blood
21	chr15:49257000-49259000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:49257200-49258400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:49257200-49259800	Enhancers	HMEC	breast
24	chr15:49257600-49258600	Enhancers	Dnd41	blood
25	chr15:49257600-49259600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:49257600-49259800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:49257800-49259600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr15:49257800-49259800	Enhancers	NHEK	skin
29	chr15:49257800-49260200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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