Variant report

Variant	rs73404370
Chromosome Location	chr11:9405365-9405366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:9405090..9407610-chr11:9440133..9443604,3	MCF-7	breast:
2	chr11:9403958..9411793-chr11:9477944..9485616,22	K562	blood:
3	chr11:9334944..9338278-chr11:9404354..9407861,9	MCF-7	breast:
4	chr11:9023701..9026254-chr11:9404770..9407613,2	K562	blood:
5	chr11:9334169..9339249-chr11:9404487..9409469,24	K562	blood:
6	chr11:9328102..9338305-chr11:9404480..9412498,38	K562	blood:
7	chr11:9328690..9334073-chr11:9404480..9408917,7	K562	blood:
8	chr1:211034100..211037099-chr11:9405144..9407454,2	MCF-7	breast:
9	chr11:9334942..9338160-chr11:9405201..9408296,5	MCF-7	breast:
10	chr1:211035595..211037101-chr11:9405067..9407537,2	K562	blood:
11	chr11:9405101..9410331-chr11:9478772..9485340,14	K562	blood:
12	chr11:9402784..9404391-chr11:9404476..9406126,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000175352	Chromatin interaction
ENSG00000166471	Chromatin interaction
ENSG00000254884	Chromatin interaction
ENSG00000205339	Chromatin interaction
ENSG00000166478	Chromatin interaction
ENSG00000268403	Chromatin interaction
ENSG00000253973	Chromatin interaction
ENSG00000224668	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1048487	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11042331	0.82[AFR][1000 genomes]
rs11042379	0.81[AFR][1000 genomes]
rs12274646	0.81[AFR][1000 genomes]
rs56067293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56080598	0.81[AFR][1000 genomes]
rs57731483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58580896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58602953	0.81[AFR][1000 genomes]
rs58904027	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59113683	0.81[AFR][1000 genomes]
rs59571955	0.81[AFR][1000 genomes]
rs73404376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404392	0.89[AFR][1000 genomes]
rs73404395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406232	0.95[AFR][1000 genomes]
rs73406233	0.95[AFR][1000 genomes]
rs73406243	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406255	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406259	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406261	0.81[AFR][1000 genomes]
rs73406268	0.81[AFR][1000 genomes]
rs73406269	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9386800-9406000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:9398200-9405800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:9398600-9405800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:9399000-9405800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:9400800-9406000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:9401200-9405800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:9401200-9406000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:9402200-9405600	Weak transcription	Left Ventricle	heart
9	chr11:9402800-9405800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:9402800-9405800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:9402800-9405800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:9402800-9405800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:9402800-9405800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:9402800-9405800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:9402800-9405800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:9402800-9405800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:9402800-9405800	Weak transcription	A549	lung
18	chr11:9402800-9405800	Weak transcription	NHDF-Ad	bronchial
19	chr11:9402800-9405800	Weak transcription	NHEK	skin
20	chr11:9403000-9405400	Weak transcription	Fetal Heart	heart
21	chr11:9403000-9405800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:9403000-9405800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:9403000-9405800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:9403000-9405800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:9403200-9405800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:9403200-9405800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr11:9403400-9405800	Weak transcription	Fetal Intestine Large	intestine
28	chr11:9403400-9405800	Weak transcription	Fetal Intestine Small	intestine
29	chr11:9403400-9405800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr11:9403400-9405800	Enhancers	HepG2	liver
31	chr11:9405000-9405400	Weak transcription	Hela-S3	cervix

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