Variant report

Variant	rs7340465
Chromosome Location	chr2:100621794-100621795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11123807	0.86[CEU][hapmap]
rs1370355	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100563200-100625400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:100577800-100623000	Weak transcription	Adipose Nuclei	Adipose
3	chr2:100577800-100623000	Weak transcription	Brain Angular Gyrus	brain
4	chr2:100587400-100623000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr2:100587400-100623000	Weak transcription	Spleen	Spleen
6	chr2:100592600-100626400	Weak transcription	NH-A	brain
7	chr2:100594600-100623000	Weak transcription	Gastric	stomach
8	chr2:100598600-100623000	Weak transcription	Lung	lung
9	chr2:100605200-100627200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr2:100605400-100623000	Weak transcription	Ovary	ovary
11	chr2:100605400-100627800	Weak transcription	Right Ventricle	heart
12	chr2:100607400-100623000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:100607800-100622800	Weak transcription	Brain Germinal Matrix	brain
14	chr2:100610800-100625800	Strong transcription	Primary B cells from peripheral blood	blood
15	chr2:100612000-100634200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr2:100613200-100626200	Strong transcription	Primary B cells from cord blood	blood
17	chr2:100614400-100625600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr2:100614800-100623400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:100615000-100623000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr2:100615000-100623000	Weak transcription	Thymus	Thymus
21	chr2:100615600-100626600	Strong transcription	Primary T cells from cord blood	blood
22	chr2:100615600-100638400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr2:100616000-100623000	Weak transcription	Fetal Lung	lung
24	chr2:100616000-100623000	Weak transcription	Osteobl	bone
25	chr2:100616600-100625200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr2:100617200-100625800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr2:100617600-100627400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr2:100617800-100626200	Weak transcription	Placenta	Placenta
29	chr2:100618200-100624200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr2:100618200-100625000	Weak transcription	Left Ventricle	heart
31	chr2:100618400-100621800	Weak transcription	Fetal Thymus	thymus
32	chr2:100618600-100622800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr2:100618600-100623000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr2:100618600-100623000	Weak transcription	Aorta	Aorta
35	chr2:100618600-100623000	Weak transcription	Fetal Stomach	stomach
36	chr2:100618600-100623600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr2:100619200-100623000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr2:100619600-100625000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr2:100620000-100625600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr2:100620200-100622600	Weak transcription	Fetal Brain Female	brain
41	chr2:100620200-100625400	Weak transcription	Fetal Kidney	kidney
42	chr2:100620200-100628000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr2:100620400-100626000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr2:100620600-100623000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr2:100620600-100623000	Weak transcription	Fetal Intestine Small	intestine
46	chr2:100620600-100625400	Weak transcription	Fetal Brain Male	brain
47	chr2:100620600-100635200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr2:100621000-100622000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr2:100621000-100623000	Weak transcription	Colon Smooth Muscle	Colon
50	chr2:100621200-100622200	Strong transcription	Monocytes-CD14+_RO01746	blood

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