Variant report

Variant	rs73405137
Chromosome Location	chr15:50798419-50798420
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50646420..50649209-chr15:50796093..50799049,3	MCF-7	breast:
2	chr15:50649293..50650992-chr15:50796880..50798462,2	K562	blood:

Variant related genes	Relation type
ENSG00000244879	Chromatin interaction
ENSG00000104064	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56883968	0.83[AFR][1000 genomes]
rs60459520	0.83[AFR][1000 genomes]
rs73395550	0.83[AFR][1000 genomes]
rs73395563	0.83[AFR][1000 genomes]
rs73395593	0.83[AFR][1000 genomes]
rs73403133	1.00[AFR][1000 genomes]
rs73405109	1.00[AFR][1000 genomes]
rs73405200	0.83[AFR][1000 genomes]
rs73407291	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv524613	chr15:50656449-50868779	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1040717	chr15:50715572-50846521	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1053966	chr15:50715572-51133186	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
6	nsv542383	chr15:50715572-51133186	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
7	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv1049576	chr15:50744781-50843495	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
11	nsv1051990	chr15:50745814-51133186	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
12	nsv1054970	chr15:50761410-51036625	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
13	nsv457134	chr15:50770868-51184583	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
14	nsv471242	chr15:50770868-51184583	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
15	nsv569396	chr15:50770868-51184583	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
16	nsv457135	chr15:50770868-51189707	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
17	nsv569397	chr15:50770868-51189707	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
18	nsv1048621	chr15:50775451-51115535	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
19	nsv1047039	chr15:50782070-51187804	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
20	nsv542385	chr15:50782070-51187804	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
21	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
22	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
23	nsv431389	chr15:50795835-50979738	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50786200-50810000	Weak transcription	Psoas Muscle	Psoas
2	chr15:50791400-50805400	Weak transcription	Small Intestine	intestine
3	chr15:50793200-50799800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:50793200-50804400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:50793400-50805200	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:50794200-50799200	Weak transcription	NH-A	brain
7	chr15:50794400-50804600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:50795800-50798800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:50795800-50800200	Weak transcription	GM12878-XiMat	blood
10	chr15:50795800-50802600	Weak transcription	Fetal Brain Female	brain
11	chr15:50795800-50803600	Weak transcription	Fetal Lung	lung
12	chr15:50795800-50804000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:50795800-50807200	Weak transcription	Adipose Nuclei	Adipose
14	chr15:50796000-50798800	Weak transcription	Lung	lung
15	chr15:50796000-50798800	Weak transcription	HSMM	muscle
16	chr15:50796000-50799400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr15:50796000-50800000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr15:50796000-50800800	Weak transcription	Fetal Intestine Small	intestine
19	chr15:50796000-50801400	Weak transcription	Placenta	Placenta
20	chr15:50796000-50803200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr15:50796000-50804400	Weak transcription	Left Ventricle	heart
22	chr15:50796000-50807200	Weak transcription	A549	lung
23	chr15:50796200-50803600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr15:50796200-50804800	Weak transcription	Primary T cells from cord blood	blood
25	chr15:50796600-50801600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:50796600-50804800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr15:50796800-50798600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr15:50796800-50807200	Weak transcription	Liver	Liver
29	chr15:50797000-50798600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr15:50797000-50798600	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr15:50797000-50798600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:50797000-50798600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:50797000-50798600	Weak transcription	Fetal Muscle Leg	muscle
34	chr15:50797000-50798600	Weak transcription	Fetal Stomach	stomach
35	chr15:50797000-50800800	Weak transcription	Thymus	Thymus
36	chr15:50797000-50805400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:50797400-50811600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr15:50797600-50799200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr15:50798000-50798600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr15:50798000-50798600	Enhancers	H9 Cell Line	embryonic stem cell
41	chr15:50798000-50798600	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr15:50798000-50798600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:50798000-50798600	Enhancers	Ovary	ovary
44	chr15:50798000-50798800	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr15:50798000-50798800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr15:50798000-50798800	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr15:50798000-50798800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:50798000-50798800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr15:50798000-50799000	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr15:50798200-50798600	Enhancers	H1 Cell Line	embryonic stem cell

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