Variant report

Variant	rs73405707
Chromosome Location	chr6:35076241-35076242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs35847323	1.00[EUR][1000 genomes]
rs61403214	1.00[EUR][1000 genomes]
rs73405745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405762	1.00[AMR][1000 genomes]
rs73405763	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405773	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405794	1.00[AMR][1000 genomes]
rs73405800	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869750	chr6:35031548-35085585	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35075200-35076400	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr6:35076000-35076400	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr6:35076200-35076400	Enhancers	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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