Variant report

Variant	rs73406562
Chromosome Location	chr15:42877863-42877864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42873048..42876397-chr15:42877350..42880260,3	K562	blood:
2	chr15:42870994..42874548-chr15:42877350..42881148,3	K562	blood:
3	chr15:42876086..42877947-chr15:42884244..42887556,3	K562	blood:
4	chr15:42877467..42879240-chr15:42881320..42882829,2	K562	blood:
5	chr15:42867158..42870552-chr15:42876715..42882343,6	K562	blood:
6	chr15:42874834..42878108-chr15:42881601..42883971,4	K562	blood:

Variant related genes	Relation type
ENSG00000260282	Chromatin interaction
ENSG00000159433	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17767270	0.81[AFR][1000 genomes]
rs73406561	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42869000-42887400	Weak transcription	Small Intestine	intestine
2	chr15:42873800-42878200	Weak transcription	Esophagus	oesophagus
3	chr15:42874000-42878000	Enhancers	K562	blood
4	chr15:42874000-42883000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:42874200-42879400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:42874200-42880800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:42874200-42883400	Weak transcription	NHEK	skin
8	chr15:42874200-42883600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:42874200-42885800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:42874200-42894400	Weak transcription	A549	lung
11	chr15:42874200-42896600	Weak transcription	Hela-S3	cervix
12	chr15:42874400-42878000	Enhancers	Brain Angular Gyrus	brain
13	chr15:42874400-42878400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr15:42874400-42880000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:42874400-42883400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr15:42874400-42884800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:42874400-42886400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr15:42874400-42887000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr15:42874400-42887000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr15:42874400-42887200	Weak transcription	Placenta	Placenta
21	chr15:42874400-42887800	Weak transcription	HSMMtube	muscle
22	chr15:42874400-42895800	Weak transcription	Thymus	Thymus
23	chr15:42874400-42900200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:42874400-42900200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr15:42874400-42900200	Weak transcription	Lung	lung
26	chr15:42874600-42880400	Weak transcription	Fetal Intestine Large	intestine
27	chr15:42874600-42881600	Weak transcription	Primary B cells from cord blood	blood
28	chr15:42874600-42888200	Weak transcription	Colonic Mucosa	Colon
29	chr15:42874600-42896200	Weak transcription	Primary T cells from cord blood	blood
30	chr15:42874800-42929800	Weak transcription	Fetal Brain Female	brain
31	chr15:42875200-42878000	Weak transcription	GM12878-XiMat	blood
32	chr15:42875200-42878200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr15:42875400-42883000	Weak transcription	Ovary	ovary
34	chr15:42876000-42888400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:42876800-42878200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:42876800-42878200	Weak transcription	Brain Germinal Matrix	brain
37	chr15:42876800-42878200	Weak transcription	NHDF-Ad	bronchial
38	chr15:42876800-42879800	Weak transcription	Osteobl	bone
39	chr15:42876800-42883800	Weak transcription	Fetal Intestine Small	intestine
40	chr15:42876800-42885200	Weak transcription	NHLF	lung
41	chr15:42876800-42887200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr15:42876800-42887400	Weak transcription	Aorta	Aorta
43	chr15:42876800-42900200	Weak transcription	HMEC	breast
44	chr15:42877000-42878000	Enhancers	Fetal Heart	heart
45	chr15:42877000-42878200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr15:42877000-42878200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr15:42877000-42878200	Weak transcription	Adipose Nuclei	Adipose
48	chr15:42877000-42878200	Weak transcription	HSMM	muscle
49	chr15:42877000-42878400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:42877000-42878400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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