Variant report

Variant	rs73407125
Chromosome Location	chr15:41725419-41725420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73403154	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044438	chr15:41560160-41745480	Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038923	chr15:41585028-41754890	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1045142	chr15:41585044-41738314	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv1039283	chr15:41620499-41745480	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases
5	nsv933757	chr15:41641236-41773058	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
6	nsv524476	chr15:41689232-41820200	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv569232	chr15:41694377-41730246	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41710400-41745200	Weak transcription	Esophagus	oesophagus
2	chr15:41710400-41750000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:41710600-41729800	Weak transcription	Brain Substantia Nigra	brain
4	chr15:41710600-41731600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:41710600-41731600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:41710600-41731800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:41710600-41733600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:41710600-41745200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:41710800-41726600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr15:41710800-41727800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:41710800-41729800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:41710800-41729800	Weak transcription	Psoas Muscle	Psoas
13	chr15:41710800-41730200	Weak transcription	Fetal Intestine Large	intestine
14	chr15:41710800-41730600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr15:41710800-41731600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:41710800-41731800	Weak transcription	Left Ventricle	heart
17	chr15:41710800-41733400	Weak transcription	Brain Hippocampus Middle	brain
18	chr15:41710800-41733400	Weak transcription	HSMMtube	muscle
19	chr15:41711000-41729800	Weak transcription	Placenta	Placenta
20	chr15:41711000-41730200	Weak transcription	Adipose Nuclei	Adipose
21	chr15:41711000-41730600	Weak transcription	Osteobl	bone
22	chr15:41711200-41727800	Weak transcription	Fetal Thymus	thymus
23	chr15:41711400-41730600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr15:41711400-41733400	Weak transcription	Brain Angular Gyrus	brain
25	chr15:41711400-41733400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:41711600-41731000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr15:41711600-41746800	Weak transcription	A549	lung
28	chr15:41711600-41759000	Weak transcription	Fetal Heart	heart
29	chr15:41711800-41735400	Weak transcription	Fetal Kidney	kidney
30	chr15:41712800-41733600	Weak transcription	Fetal Lung	lung
31	chr15:41713200-41730400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:41713200-41745200	Weak transcription	Spleen	Spleen
33	chr15:41713400-41731800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:41714800-41730600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:41715800-41730600	Weak transcription	Ovary	ovary
36	chr15:41716600-41733600	Weak transcription	HepG2	liver
37	chr15:41716800-41726600	Weak transcription	Dnd41	blood
38	chr15:41716800-41730400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr15:41716800-41733400	Weak transcription	Hela-S3	cervix
40	chr15:41717000-41729800	Weak transcription	Fetal Brain Female	brain
41	chr15:41717400-41728000	Weak transcription	Brain Germinal Matrix	brain
42	chr15:41718200-41729800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr15:41718200-41745200	Weak transcription	Pancreas	Pancrea
44	chr15:41719000-41727600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr15:41719000-41727800	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr15:41719000-41728000	Weak transcription	NH-A	brain
47	chr15:41719000-41729600	Weak transcription	Primary T cells from cord blood	blood
48	chr15:41719000-41730000	Weak transcription	Primary B cells from cord blood	blood
49	chr15:41719000-41730200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr15:41719000-41730400	Weak transcription	H1 Cell Line	embryonic stem cell

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