Variant report

Variant	rs73407797
Chromosome Location	chr9:14068852-14068853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:14068796-14068944	HepG2	liver:	n/a	chr9:14068877-14068890
2	CTCF	chr9:14068820-14068970	GM12869	blood:	n/a	chr9:14068877-14068890
3	CTCF	chr9:14068740-14068890	GM12873	blood:	n/a	chr9:14068877-14068890
4	CTCF	chr9:14068780-14068930	GM06990	blood:	n/a	chr9:14068877-14068890
5	RAD21	chr9:14068752-14069170	A549	lung:	n/a	n/a
6	SMC3	chr9:14068728-14069009	HepG2	liver:	n/a	n/a
7	RAD21	chr9:14068737-14069021	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr9:14068800-14068950	GM12871	blood:	n/a	chr9:14068877-14068890
9	CTCF	chr9:14068822-14068970	GM19238	blood:	n/a	chr9:14068877-14068890
10	RAD21	chr9:14068794-14068950	GM12878	blood:	n/a	n/a
11	CTCF	chr9:14068705-14069076	GM12878	blood:	n/a	chr9:14068877-14068890
12	RAD21	chr9:14068741-14069069	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr9:14068788-14068965	K562	blood:	n/a	chr9:14068877-14068890
14	CTCF	chr9:14068760-14068910	GM12869	blood:	n/a	chr9:14068877-14068890
15	CTCF	chr9:14068799-14068957	GM12878	blood:	n/a	chr9:14068877-14068890
16	SMC3	chr9:14068801-14069002	GM12878	blood:	n/a	n/a
17	CTCF	chr9:14068800-14068950	GM12875	blood:	n/a	chr9:14068877-14068890
18	CTCF	chr9:14068674-14068964	A549	lung:	n/a	chr9:14068877-14068890
19	RAD21	chr9:14068810-14068958	K562	blood:	n/a	n/a
20	CTCF	chr9:14068760-14068910	NB4	blood:	n/a	chr9:14068877-14068890
21	CTCF	chr9:14068792-14068970	A549	lung:	n/a	chr9:14068877-14068890
22	CTCF	chr9:14068780-14068930	A549	lung:	n/a	chr9:14068877-14068890
23	CTCF	chr9:14068785-14068935	A549	lung:	n/a	chr9:14068877-14068890
24	CTCF	chr9:14068780-14068930	GM12878	blood:	n/a	chr9:14068877-14068890
25	CTCF	chr9:14068780-14068930	GM12865	blood:	n/a	chr9:14068877-14068890
26	RAD21	chr9:14068673-14069036	HepG2	liver:	n/a	n/a
27	CTCF	chr9:14068852-14068938	GM19240	blood:	n/a	chr9:14068877-14068890
28	CTCF	chr9:14068743-14068997	HepG2	liver:	n/a	chr9:14068877-14068890
29	CTCF	chr9:14068800-14068950	K562	blood:	n/a	chr9:14068877-14068890
30	RAD21	chr9:14068716-14069062	HepG2	liver:	n/a	n/a
31	CTCF	chr9:14068733-14069014	K562	blood:	n/a	chr9:14068877-14068890
32	CTCF	chr9:14068851-14068940	MCF-7	breast:	n/a	chr9:14068877-14068890
33	CTCF	chr9:14068778-14068973	A549	lung:	n/a	chr9:14068877-14068890
34	RAD21	chr9:14068817-14068975	K562	blood:	n/a	n/a
35	CTCF	chr9:14068800-14068950	HepG2	liver:	n/a	chr9:14068877-14068890
36	CTCF	chr9:14068840-14068990	GM12867	blood:	n/a	chr9:14068877-14068890
37	RAD21	chr9:14068750-14069105	HCT-116	colon:	n/a	n/a
38	RAD21	chr9:14068809-14069005	Hela-S3	cervix:	n/a	n/a
39	CTCF	chr9:14068820-14068970	A549	lung:	n/a	chr9:14068877-14068890
40	HCFC1	chr9:14068796-14068952	K562	blood:	n/a	n/a
41	RAD21	chr9:14068745-14069120	A549	lung:	n/a	n/a
42	CTCF	chr9:14068836-14068968	GM12891	blood:	n/a	chr9:14068877-14068890
43	RAD21	chr9:14068769-14069060	GM12878	blood:	n/a	n/a
44	CTCF	chr9:14068780-14068930	Caco-2	colon:	n/a	chr9:14068877-14068890
45	CTCF	chr9:14068840-14068990	BJ	skin:	n/a	chr9:14068877-14068890
46	SMC3	chr9:14068769-14068926	K562	blood:	n/a	n/a
47	RAD21	chr9:14068757-14068946	GM12878	blood:	n/a	n/a
48	CTCF	chr9:14068780-14068930	HepG2	liver:	n/a	chr9:14068877-14068890
49	CTCF	chr9:14068820-14068970	GM12875	blood:	n/a	chr9:14068877-14068890
50	CTCF	chr9:14068760-14068910	AG10803	skin:	n/a	chr9:14068877-14068890

Variant related genes	Relation type
ENSG00000213954	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10217689	0.89[AFR][1000 genomes]
rs10283831	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs544565	0.91[AFR][1000 genomes]
rs60600345	0.82[EUR][1000 genomes]
rs72698733	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv429998	chr9:14043516-14214688	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14063400-14074000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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