Variant report

Variant	rs73408416
Chromosome Location	chr12:118404750-118404751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16948013	1.00[EUR][1000 genomes]
rs55904204	1.00[EUR][1000 genomes]
rs57602221	1.00[EUR][1000 genomes]
rs57850246	1.00[EUR][1000 genomes]
rs58100614	1.00[EUR][1000 genomes]
rs60915005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7299791	1.00[EUR][1000 genomes]
rs7309319	1.00[EUR][1000 genomes]
rs9651902	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560388	chr12:118391600-118482352	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118395600-118405800	Weak transcription	Pancreas	Pancrea
2	chr12:118403800-118407600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr12:118404000-118405200	Bivalent/Poised TSS	Brain Angular Gyrus	brain
4	chr12:118404000-118406400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
5	chr12:118404000-118407600	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr12:118404200-118405000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr12:118404200-118405800	Bivalent Enhancer	Fetal Brain Male	brain
8	chr12:118404200-118406200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
9	chr12:118404200-118406600	Weak transcription	Right Atrium	heart
10	chr12:118404400-118405200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
11	chr12:118404400-118405400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr12:118404400-118407600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
13	chr12:118404400-118407800	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr12:118404600-118404800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr12:118404600-118404800	Enhancers	Lung	lung
16	chr12:118404600-118405400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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