Variant report

Variant	rs73408552
Chromosome Location	chr22:33366804-33366805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33365795..33367834-chr22:33378280..33381010,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs59856303	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73158368	1.00[AMR][1000 genomes]
rs73401506	1.00[AMR][1000 genomes]
rs73401508	1.00[AMR][1000 genomes]
rs73401512	1.00[AMR][1000 genomes]
rs73403237	1.00[AMR][1000 genomes]
rs73403252	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403269	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405263	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405271	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408571	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33343200-33372600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr22:33348000-33382400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr22:33354000-33374000	Weak transcription	Brain Angular Gyrus	brain
5	chr22:33354400-33381800	Weak transcription	Fetal Brain Male	brain
6	chr22:33354600-33387400	Weak transcription	Fetal Brain Female	brain
7	chr22:33361000-33371400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr22:33361000-33380400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr22:33361200-33368400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr22:33364000-33367800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr22:33364600-33367000	Weak transcription	Fetal Kidney	kidney
12	chr22:33365000-33370400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr22:33365400-33372000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr22:33365800-33367600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr22:33365800-33373800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr22:33366400-33367600	Enhancers	Colon Smooth Muscle	Colon
17	chr22:33366400-33368600	Enhancers	Rectal Smooth Muscle	rectum
18	chr22:33366600-33368200	Enhancers	Fetal Stomach	stomach
19	chr22:33366800-33367200	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr22:33366800-33367400	Enhancers	Liver	Liver
21	chr22:33366800-33367800	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr22:33366800-33368200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr22:33366800-33368200	Enhancers	Stomach Smooth Muscle	stomach

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