Variant report

Variant	rs73408786
Chromosome Location	chr7:103321514-103321515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58258672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv933934	chr7:103301959-103322483	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv933167	chr7:103312181-103322483	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103319400-103321800	Enhancers	Osteobl	bone
2	chr7:103319600-103323200	Enhancers	Hela-S3	cervix
3	chr7:103319800-103321600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:103319800-103322200	Enhancers	HepG2	liver
5	chr7:103320400-103321600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:103320400-103321600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:103320600-103321600	Enhancers	NHDF-Ad	bronchial
8	chr7:103320600-103321800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:103320800-103321600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:103320800-103321800	Enhancers	K562	blood
11	chr7:103321200-103321600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:103321400-103329800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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