Variant report

Variant	rs73409328
Chromosome Location	chr8:131308142-131308143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM49B-7	chr8:131307601-131308779	NONHSAT129152

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16904217	0.81[EUR][1000 genomes]
rs6470810	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6992421	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6992854	1.00[AMR][1000 genomes]
rs7010678	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7812798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7816822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7821176	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7833272	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131282400-131314800	Weak transcription	Gastric	stomach
2	chr8:131297200-131308200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:131297600-131311400	Weak transcription	Fetal Lung	lung
4	chr8:131300400-131314800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:131301000-131308200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:131301000-131309600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:131301600-131309400	Enhancers	Fetal Heart	heart
8	chr8:131302200-131308800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:131302200-131308800	Enhancers	Brain Angular Gyrus	brain
10	chr8:131302600-131317400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr8:131302800-131315400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:131303200-131310400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr8:131304200-131309000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:131304400-131308600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:131304400-131309000	Enhancers	Brain Substantia Nigra	brain
16	chr8:131304400-131309000	Enhancers	Psoas Muscle	Psoas
17	chr8:131304400-131310000	Enhancers	HUVEC	blood vessel
18	chr8:131304400-131315600	Enhancers	Brain Hippocampus Middle	brain
19	chr8:131304600-131309000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr8:131304600-131309000	Enhancers	GM12878-XiMat	blood
21	chr8:131304600-131310600	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr8:131304600-131311800	Enhancers	Brain Anterior Caudate	brain
23	chr8:131304800-131309000	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr8:131304800-131312600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr8:131305000-131308400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:131305000-131308600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:131305200-131313800	Enhancers	Right Ventricle	heart
28	chr8:131305200-131315400	Enhancers	Brain Cingulate Gyrus	brain
29	chr8:131305400-131311800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:131305600-131308400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr8:131305600-131308800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr8:131305800-131308400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr8:131305800-131308800	Weak transcription	K562	blood
34	chr8:131305800-131315400	Enhancers	Stomach Smooth Muscle	stomach
35	chr8:131306000-131308200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr8:131306000-131308400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr8:131306000-131308400	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr8:131306000-131308400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr8:131306000-131308800	Weak transcription	Brain Germinal Matrix	brain
40	chr8:131306000-131309600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr8:131306000-131309600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr8:131306000-131314600	Weak transcription	Placenta	Placenta
43	chr8:131306000-131314800	Weak transcription	Fetal Brain Female	brain
44	chr8:131306000-131321200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr8:131306000-131321600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr8:131306200-131308200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr8:131306200-131308600	Weak transcription	Primary B cells from cord blood	blood
48	chr8:131306200-131309800	Weak transcription	Thymus	Thymus
49	chr8:131306200-131310600	Enhancers	HepG2	liver
50	chr8:131306200-131312200	Weak transcription	Fetal Brain Male	brain

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