Variant report

Variant	rs73409347
Chromosome Location	chr8:131326429-131326430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:131325475..131327284-chr8:131328530..131331527,2	MCF-7	breast:
2	chr8:131325774..131327833-chr8:131336321..131339218,2	K562	blood:
3	chr8:131324792..131327284-chr8:131328218..131332203,4	K562	blood:
4	chr8:131320555..131323239-chr8:131323603..131327093,4	MCF-7	breast:
5	chr8:131324792..131327507-chr8:131328218..131332203,4	K562	blood:
6	chr8:131320315..131322407-chr8:131325381..131327226,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57213366	1.00[AMR][1000 genomes]
rs58012382	1.00[AMR][1000 genomes]
rs58498075	1.00[AMR][1000 genomes]
rs58664881	1.00[AMR][1000 genomes]
rs59411017	1.00[AMR][1000 genomes]
rs61329743	1.00[AMR][1000 genomes]
rs61358542	1.00[AMR][1000 genomes]
rs61578845	1.00[AMR][1000 genomes]
rs73423598	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131307000-131329600	Weak transcription	Aorta	Aorta
2	chr8:131310800-131328200	Weak transcription	Lung	lung
3	chr8:131313400-131335000	Weak transcription	Pancreas	Pancrea
4	chr8:131315600-131331600	Weak transcription	Thymus	Thymus
5	chr8:131315600-131342000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:131315600-131353400	Weak transcription	Dnd41	blood
7	chr8:131319400-131333600	Weak transcription	HepG2	liver
8	chr8:131319800-131329800	Weak transcription	Right Ventricle	heart
9	chr8:131322000-131326800	Enhancers	Fetal Heart	heart
10	chr8:131322000-131328800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr8:131322000-131329000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr8:131322000-131335000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:131322000-131338200	Weak transcription	Esophagus	oesophagus
14	chr8:131322200-131328800	Weak transcription	Small Intestine	intestine
15	chr8:131322600-131326800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr8:131322800-131326800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:131323000-131326600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr8:131323400-131329600	Weak transcription	Brain Angular Gyrus	brain
19	chr8:131323400-131329800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr8:131323400-131329800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:131323400-131345600	Weak transcription	Fetal Intestine Small	intestine
22	chr8:131323600-131331600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr8:131324200-131326600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr8:131324200-131326800	Enhancers	Fetal Lung	lung
25	chr8:131324200-131327200	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr8:131324400-131327000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:131324400-131327000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr8:131324400-131327000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr8:131324400-131327000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr8:131324400-131327200	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr8:131324400-131327200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr8:131324600-131326600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr8:131324600-131327000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr8:131324600-131327000	Enhancers	Primary hematopoietic stem cells	blood
35	chr8:131324600-131327000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr8:131324600-131327000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr8:131324800-131327000	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr8:131324800-131327200	Enhancers	Fetal Kidney	kidney
39	chr8:131324800-131327600	Enhancers	Osteobl	bone
40	chr8:131324800-131328400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr8:131324800-131344600	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr8:131325000-131326600	Enhancers	Primary B cells from cord blood	blood
43	chr8:131325000-131326800	Enhancers	A549	lung
44	chr8:131325000-131327000	Enhancers	Muscle Satellite Cultured Cells	--
45	chr8:131325000-131327000	Enhancers	Fetal Stomach	stomach
46	chr8:131325000-131327200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr8:131325000-131327200	Enhancers	Primary B cells from peripheral blood	blood
48	chr8:131325000-131327400	Enhancers	HMEC	breast
49	chr8:131325000-131328200	Enhancers	NHEK	skin
50	chr8:131325000-131328200	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links