Variant report

Variant	rs73409572
Chromosome Location	chr9:7104374-7104375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs60445319	1.00[AFR][1000 genomes]
rs73407474	1.00[AFR][1000 genomes]
rs73409561	1.00[AFR][1000 genomes]
rs73409575	1.00[AFR][1000 genomes]
rs73409582	0.84[AFR][1000 genomes]
rs73409583	0.84[AFR][1000 genomes]
rs73409588	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv869932	chr9:7068359-7133384	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892189	chr9:7091968-7150997	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv892190	chr9:7094860-7186074	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7012200-7111200	Weak transcription	Colonic Mucosa	Colon
2	chr9:7061200-7104600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr9:7075600-7105800	Weak transcription	NHLF	lung
4	chr9:7086600-7105600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:7088800-7128000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr9:7095400-7107400	Weak transcription	Fetal Kidney	kidney
7	chr9:7098600-7118000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:7098800-7108400	Weak transcription	HSMMtube	muscle
9	chr9:7099000-7106800	Weak transcription	Hela-S3	cervix
10	chr9:7100800-7120200	Strong transcription	Primary B cells from cord blood	blood
11	chr9:7102800-7114000	Strong transcription	Primary T cells from cord blood	blood
12	chr9:7103000-7105600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:7103000-7106000	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr9:7103000-7110200	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr9:7103000-7148600	Strong transcription	Primary B cells from peripheral blood	blood
16	chr9:7103200-7104600	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr9:7103200-7104600	Strong transcription	Fetal Thymus	thymus
18	chr9:7103200-7104600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr9:7103200-7104800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr9:7103200-7104800	Enhancers	Placenta	Placenta
21	chr9:7103200-7105000	Strong transcription	Fetal Intestine Small	intestine
22	chr9:7103200-7105400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr9:7103200-7105800	Strong transcription	Stomach Smooth Muscle	stomach
24	chr9:7103200-7106000	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr9:7103200-7108200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr9:7103200-7108200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:7103200-7116200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr9:7103400-7104400	Strong transcription	Fetal Muscle Leg	muscle
29	chr9:7103400-7104600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr9:7103400-7105000	Strong transcription	Fetal Stomach	stomach
31	chr9:7103400-7105400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr9:7103400-7105400	Enhancers	Psoas Muscle	Psoas
33	chr9:7103400-7105600	Strong transcription	Thymus	Thymus
34	chr9:7103400-7105800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr9:7103400-7105800	Strong transcription	Liver	Liver
36	chr9:7103400-7105800	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr9:7103400-7106200	Strong transcription	Duodenum Mucosa	Duodenum
38	chr9:7103400-7107200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr9:7103600-7104400	Strong transcription	Aorta	Aorta
40	chr9:7103600-7104400	Strong transcription	Brain Angular Gyrus	brain
41	chr9:7103600-7104400	Strong transcription	Brain Anterior Caudate	brain
42	chr9:7103600-7104400	ZNF genes & repeats	Gastric	stomach
43	chr9:7103600-7104400	ZNF genes & repeats	Lung	lung
44	chr9:7103600-7104400	Strong transcription	Pancreas	Pancrea
45	chr9:7103600-7104600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:7103600-7104800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr9:7103600-7104800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr9:7103600-7104800	Strong transcription	Small Intestine	intestine
49	chr9:7103600-7105000	Strong transcription	Rectal Smooth Muscle	rectum
50	chr9:7103600-7105000	Strong transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links