Variant report

Variant	rs7340973
Chromosome Location	chr4:79453659-79453660
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79447947..79450559-chr4:79451809..79454470,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17003229	1.00[CEU][hapmap]
rs28456030	1.00[EUR][1000 genomes]
rs7340809	0.85[AMR][1000 genomes]
rs7691528	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79363400-79455200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:79363800-79464200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:79378600-79455800	Weak transcription	Right Ventricle	heart
4	chr4:79385000-79467400	Weak transcription	Fetal Brain Male	brain
5	chr4:79393800-79467200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr4:79401000-79467200	Weak transcription	Psoas Muscle	Psoas
7	chr4:79410200-79461800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:79426800-79455000	Weak transcription	Esophagus	oesophagus
9	chr4:79428200-79466200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:79428600-79459000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:79430200-79456000	Weak transcription	Aorta	Aorta
12	chr4:79430200-79456000	Weak transcription	Pancreas	Pancrea
13	chr4:79430800-79454600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:79435600-79455600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr4:79435600-79463000	Weak transcription	Fetal Heart	heart
16	chr4:79435600-79467200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr4:79440600-79465800	Weak transcription	Lung	lung
18	chr4:79440600-79467200	Weak transcription	Left Ventricle	heart
19	chr4:79440800-79456200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr4:79442400-79465600	Weak transcription	Fetal Stomach	stomach
21	chr4:79444800-79472400	Weak transcription	Right Atrium	heart
22	chr4:79445800-79455600	Weak transcription	HepG2	liver
23	chr4:79446600-79456000	Weak transcription	Fetal Intestine Large	intestine
24	chr4:79446800-79453800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr4:79447000-79454600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr4:79447800-79455600	Weak transcription	Fetal Intestine Small	intestine
27	chr4:79447800-79455600	Weak transcription	Fetal Kidney	kidney
28	chr4:79448000-79455600	Weak transcription	Fetal Lung	lung
29	chr4:79448200-79455600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr4:79448600-79455600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr4:79449000-79455600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr4:79450200-79455400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr4:79450400-79455600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr4:79451000-79454600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr4:79451000-79455000	Weak transcription	HSMMtube	muscle
36	chr4:79451400-79462800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr4:79451600-79455000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr4:79451600-79461600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr4:79451800-79455200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr4:79451800-79463400	Weak transcription	NHDF-Ad	bronchial
41	chr4:79451800-79463800	Weak transcription	NH-A	brain
42	chr4:79452000-79461600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:79452800-79453800	Enhancers	HUVEC	blood vessel
44	chr4:79453200-79453800	Enhancers	HMEC	breast
45	chr4:79453400-79464200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr4:79453400-79467200	Weak transcription	Placenta	Placenta
47	chr4:79453600-79454400	Weak transcription	NHEK	skin
48	chr4:79453600-79454600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr4:79453600-79454600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr4:79453600-79454600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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